Magnesium in PDB 2cea: Cell Division Protein Ftsh
Protein crystallography data
The structure of Cell Division Protein Ftsh, PDB code: 2cea
was solved by
C.Bieniossek,
U.Baumann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
2.75
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
165.316,
165.316,
234.749,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.6 /
26.2
|
Other elements in 2cea:
The structure of Cell Division Protein Ftsh also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cell Division Protein Ftsh
(pdb code 2cea). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Cell Division Protein Ftsh, PDB code: 2cea:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 2cea
Go back to
Magnesium Binding Sites List in 2cea
Magnesium binding site 1 out
of 6 in the Cell Division Protein Ftsh
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cell Division Protein Ftsh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1605
b:47.3
occ:1.00
|
O
|
A:HOH2046
|
2.0
|
33.6
|
1.0
|
O2B
|
A:ADP1604
|
2.2
|
39.9
|
1.0
|
PB
|
A:ADP1604
|
3.5
|
32.3
|
1.0
|
O2A
|
A:ADP1604
|
3.7
|
38.6
|
1.0
|
O3B
|
A:ADP1604
|
3.8
|
35.5
|
1.0
|
O
|
A:HOH2007
|
3.8
|
72.6
|
1.0
|
O3A
|
A:ADP1604
|
4.3
|
34.4
|
1.0
|
N
|
A:GLY204
|
4.4
|
41.0
|
1.0
|
OD1
|
A:ASP260
|
4.4
|
63.4
|
1.0
|
O1B
|
A:ADP1604
|
4.6
|
39.1
|
1.0
|
PA
|
A:ADP1604
|
4.6
|
41.4
|
1.0
|
NZ
|
A:LYS207
|
4.7
|
46.6
|
1.0
|
CA
|
A:PRO203
|
4.7
|
41.1
|
1.0
|
CB
|
A:PRO203
|
4.7
|
39.9
|
1.0
|
OD2
|
A:ASP260
|
4.9
|
51.0
|
1.0
|
OG1
|
A:THR208
|
5.0
|
43.5
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 2cea
Go back to
Magnesium Binding Sites List in 2cea
Magnesium binding site 2 out
of 6 in the Cell Division Protein Ftsh
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cell Division Protein Ftsh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1608
b:44.5
occ:1.00
|
O2B
|
B:ADP1607
|
2.2
|
33.3
|
1.0
|
O
|
B:HOH2035
|
2.2
|
49.3
|
1.0
|
PB
|
B:ADP1607
|
3.4
|
26.1
|
1.0
|
O
|
B:HOH2008
|
3.5
|
29.6
|
1.0
|
O3B
|
B:ADP1607
|
3.7
|
20.3
|
1.0
|
NZ
|
B:LYS207
|
3.9
|
39.4
|
1.0
|
O2A
|
B:ADP1607
|
4.2
|
37.4
|
1.0
|
OD1
|
B:ASP260
|
4.4
|
52.9
|
1.0
|
CA
|
B:PRO203
|
4.4
|
40.7
|
1.0
|
N
|
B:GLY204
|
4.4
|
42.4
|
1.0
|
O1B
|
B:ADP1607
|
4.4
|
26.4
|
1.0
|
OD2
|
B:ASP260
|
4.5
|
59.9
|
1.0
|
O3A
|
B:ADP1607
|
4.5
|
29.9
|
1.0
|
CB
|
B:PRO203
|
4.6
|
40.1
|
1.0
|
CG
|
B:ASP260
|
4.9
|
51.1
|
1.0
|
C
|
B:PRO203
|
5.0
|
41.0
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 2cea
Go back to
Magnesium Binding Sites List in 2cea
Magnesium binding site 3 out
of 6 in the Cell Division Protein Ftsh
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cell Division Protein Ftsh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1609
b:60.1
occ:1.00
|
O2B
|
C:ADP1608
|
2.2
|
54.2
|
1.0
|
PB
|
C:ADP1608
|
3.2
|
56.2
|
1.0
|
NZ
|
C:LYS207
|
3.2
|
45.8
|
1.0
|
O3B
|
C:ADP1608
|
3.4
|
57.0
|
1.0
|
CA
|
C:PRO203
|
3.4
|
41.6
|
1.0
|
CB
|
C:PRO203
|
3.7
|
41.4
|
1.0
|
CE
|
C:LYS207
|
3.8
|
44.8
|
1.0
|
O1B
|
C:ADP1608
|
3.9
|
57.9
|
1.0
|
N
|
C:GLY204
|
3.9
|
41.5
|
1.0
|
O2A
|
C:ADP1608
|
4.1
|
60.2
|
1.0
|
C
|
C:PRO203
|
4.2
|
41.3
|
1.0
|
N
|
C:PRO203
|
4.5
|
40.7
|
1.0
|
O3A
|
C:ADP1608
|
4.5
|
59.4
|
1.0
|
OD1
|
C:ASN307
|
4.7
|
42.3
|
1.0
|
OD2
|
C:ASP260
|
4.9
|
44.2
|
1.0
|
O
|
C:PRO202
|
4.9
|
41.1
|
1.0
|
OD1
|
C:ASP260
|
5.0
|
49.3
|
1.0
|
CG
|
C:PRO203
|
5.0
|
40.6
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 2cea
Go back to
Magnesium Binding Sites List in 2cea
Magnesium binding site 4 out
of 6 in the Cell Division Protein Ftsh
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cell Division Protein Ftsh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1609
b:41.8
occ:1.00
|
O2A
|
D:ADP1608
|
2.2
|
31.8
|
1.0
|
O2B
|
D:ADP1608
|
2.2
|
30.5
|
1.0
|
O
|
D:HOH2006
|
2.3
|
58.0
|
1.0
|
O
|
D:HOH2033
|
2.4
|
38.7
|
1.0
|
O
|
D:HOH2032
|
2.5
|
50.9
|
1.0
|
PB
|
D:ADP1608
|
2.9
|
30.1
|
1.0
|
O3A
|
D:ADP1608
|
3.0
|
26.3
|
1.0
|
PA
|
D:ADP1608
|
3.1
|
30.5
|
1.0
|
O3B
|
D:ADP1608
|
3.1
|
21.7
|
1.0
|
O
|
D:HOH2034
|
3.1
|
31.7
|
1.0
|
O5'
|
D:ADP1608
|
3.5
|
25.7
|
1.0
|
O
|
D:HOH2007
|
3.7
|
36.8
|
1.0
|
OG1
|
D:THR208
|
4.0
|
34.3
|
1.0
|
O1B
|
D:ADP1608
|
4.3
|
24.7
|
1.0
|
N
|
D:GLY204
|
4.4
|
40.9
|
1.0
|
O1A
|
D:ADP1608
|
4.5
|
24.9
|
1.0
|
CA
|
D:GLY204
|
4.7
|
41.2
|
1.0
|
C5'
|
D:ADP1608
|
4.7
|
27.5
|
1.0
|
CB
|
D:THR208
|
4.9
|
38.7
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 2cea
Go back to
Magnesium Binding Sites List in 2cea
Magnesium binding site 5 out
of 6 in the Cell Division Protein Ftsh
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cell Division Protein Ftsh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1605
b:53.2
occ:1.00
|
O
|
E:HOH2034
|
2.0
|
40.6
|
1.0
|
O2B
|
E:ADP1604
|
2.2
|
43.2
|
1.0
|
O2A
|
E:ADP1604
|
2.2
|
48.8
|
1.0
|
O
|
E:HOH2033
|
2.2
|
44.1
|
1.0
|
O
|
E:HOH2032
|
2.3
|
46.0
|
1.0
|
PB
|
E:ADP1604
|
3.1
|
42.7
|
1.0
|
O3B
|
E:ADP1604
|
3.1
|
40.1
|
1.0
|
PA
|
E:ADP1604
|
3.5
|
38.7
|
1.0
|
O3A
|
E:ADP1604
|
3.6
|
39.6
|
1.0
|
OG1
|
E:THR208
|
4.1
|
48.6
|
1.0
|
O5'
|
E:ADP1604
|
4.1
|
40.0
|
1.0
|
O1B
|
E:ADP1604
|
4.4
|
39.1
|
1.0
|
N
|
E:GLY204
|
4.4
|
41.1
|
1.0
|
O1A
|
E:ADP1604
|
4.7
|
39.9
|
1.0
|
NZ
|
E:LYS207
|
4.8
|
43.2
|
1.0
|
OD2
|
E:ASP260
|
4.9
|
51.5
|
1.0
|
OD1
|
E:ASP260
|
4.9
|
45.7
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 2cea
Go back to
Magnesium Binding Sites List in 2cea
Magnesium binding site 6 out
of 6 in the Cell Division Protein Ftsh
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cell Division Protein Ftsh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1608
b:68.0
occ:1.00
|
O2B
|
F:ADP1607
|
2.2
|
73.0
|
1.0
|
O2A
|
F:ADP1607
|
2.6
|
75.5
|
1.0
|
PB
|
F:ADP1607
|
3.0
|
77.4
|
1.0
|
O3B
|
F:ADP1607
|
3.1
|
75.9
|
1.0
|
O3A
|
F:ADP1607
|
3.5
|
77.8
|
1.0
|
PA
|
F:ADP1607
|
3.6
|
79.1
|
1.0
|
N
|
F:GLY204
|
4.2
|
41.7
|
1.0
|
O
|
F:HOH2001
|
4.3
|
63.1
|
1.0
|
O1B
|
F:ADP1607
|
4.4
|
72.8
|
1.0
|
OD1
|
F:ASP260
|
4.6
|
44.3
|
1.0
|
O1A
|
F:ADP1607
|
4.7
|
76.2
|
1.0
|
O5'
|
F:ADP1607
|
4.7
|
79.1
|
1.0
|
CA
|
F:PRO203
|
4.8
|
41.4
|
1.0
|
OG1
|
F:THR208
|
4.8
|
37.1
|
1.0
|
CA
|
F:GLY204
|
4.9
|
41.6
|
1.0
|
C
|
F:PRO203
|
5.0
|
41.5
|
1.0
|
CB
|
F:PRO203
|
5.0
|
40.7
|
1.0
|
|
Reference:
C.Bieniossek,
T.Schalch,
M.Bumann,
M.Meister,
R.Meier,
U.Baumann.
The Molecular Architecture of the Metalloprotease Ftsh. Proc.Natl.Acad.Sci.Usa V. 103 3066 2006.
ISSN: ISSN 0027-8424
PubMed: 16484367
DOI: 10.1073/PNAS.0600031103
Page generated: Tue Aug 13 22:15:14 2024
|