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Magnesium in PDB 2cg5: Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A

Enzymatic activity of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A

All present enzymatic activity of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A:
1.2.1.31; 2.3.1.85;

Protein crystallography data

The structure of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A, PDB code: 2cg5 was solved by G.Bunkoczi, A.Joshi, E.Papagrigoriu, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, F.Von Delft, S.Smith, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.361, 69.361, 184.715, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 24.7

Other elements in 2cg5:

The structure of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A (pdb code 2cg5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A, PDB code: 2cg5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2cg5

Go back to Magnesium Binding Sites List in 2cg5
Magnesium binding site 1 out of 2 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:44.0
occ:1.00
 NH2 A:ARG74 3.1 63.1 1.0
NE A:ARG74 3.3 61.7 1.0
NH1 A:ARG78 3.3 62.9 1.0
N A:GLN51 3.3 59.7 1.0
CG A:GLN51 3.4 58.1 1.0
CZ A:ARG74 3.6 62.0 1.0
CD A:ARG78 3.7 60.0 1.0
CB A:GLN51 3.7 59.2 1.0
CD A:GLN51 3.7 57.7 1.0
CB A:ILE50 4.0 60.2 1.0
CD1 A:LEU94 4.1 58.5 1.0
CA A:ILE50 4.1 60.0 1.0
OE1 A:GLN51 4.1 56.6 1.0
CA A:GLN51 4.1 59.2 1.0
CZ A:ARG78 4.1 62.3 1.0
CG A:ARG78 4.2 59.4 1.0
C A:ILE50 4.2 59.9 1.0
CB A:GLU54 4.2 64.4 1.0
NE2 A:GLN51 4.2 52.2 1.0
CG A:GLU54 4.3 66.0 1.0
NE A:ARG78 4.3 61.5 1.0
CB A:ARG74 4.3 61.3 1.0
CD A:ARG74 4.5 62.0 1.0
CG A:ARG74 4.6 61.2 1.0
CG2 A:ILE50 4.7 59.6 1.0
OE2 A:GLU54 4.8 69.6 1.0
CB A:LEU94 4.9 58.7 1.0
CG A:LEU94 4.9 58.4 1.0
NH1 A:ARG74 4.9 62.7 1.0
CD A:GLU54 5.0 68.3 1.0

Magnesium binding site 2 out of 2 in 2cg5

Go back to Magnesium Binding Sites List in 2cg5
Magnesium binding site 2 out of 2 in the Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase in Complex with Cytosolic Acyl Carrier Protein and Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1304

b:81.9
occ:1.00
 OE1 A:GLU83 4.0 70.1 1.0
NE1 A:TRP29 4.3 56.5 1.0
CZ2 A:TRP29 4.4 55.8 1.0
CE A:LYS79 4.4 57.1 1.0
NZ A:LYS79 4.4 55.0 1.0
CE2 A:TRP29 4.6 55.9 1.0
CD2 A:LEU282 4.8 59.6 1.0
CD A:GLU83 4.9 67.3 1.0
OE2 A:GLU83 5.0 68.7 1.0

Reference:

G.Bunkoczi, S.Pasta, A.Joshi, X.Wu, K.L.Kavanagh, S.Smith, U.Oppermann. Mechanism and Substrate Recognition of Human Holo Acp Synthase. Chem.Biol. V. 14 1243 2007.
ISSN: ISSN 1074-5521
PubMed: 18022563
DOI: 10.1016/J.CHEMBIOL.2007.10.013
Page generated: Mon Dec 14 07:19:04 2020

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