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Magnesium in PDB 2cz7: Fe-Type Nhase Photo-Activated For 75MIN at 105K

Enzymatic activity of Fe-Type Nhase Photo-Activated For 75MIN at 105K

All present enzymatic activity of Fe-Type Nhase Photo-Activated For 75MIN at 105K:
4.2.1.84;

Protein crystallography data

The structure of Fe-Type Nhase Photo-Activated For 75MIN at 105K, PDB code: 2cz7 was solved by M.Nojiri, Y.Kawano, K.Hashimoto, N.Kamiya, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.77 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.798, 60.384, 81.804, 90.00, 124.98, 90.00
R / Rfree (%) 14.3 / 15.3

Other elements in 2cz7:

The structure of Fe-Type Nhase Photo-Activated For 75MIN at 105K also contains other interesting chemical elements:

Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fe-Type Nhase Photo-Activated For 75MIN at 105K (pdb code 2cz7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Fe-Type Nhase Photo-Activated For 75MIN at 105K, PDB code: 2cz7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2cz7

Go back to Magnesium Binding Sites List in 2cz7
Magnesium binding site 1 out of 2 in the Fe-Type Nhase Photo-Activated For 75MIN at 105K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fe-Type Nhase Photo-Activated For 75MIN at 105K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1302

b:27.9
occ:1.00
O B:HOH1639 2.0 10.6 1.0
O B:HOH1843 2.1 7.3 0.5
O B:HOH1717 2.2 12.0 1.0
O B:HOH1635 2.5 9.0 1.0
O B:HOH1791 2.7 14.1 0.5
O B:HOH1802 4.1 31.0 1.0
O B:HOH1804 4.2 15.0 1.0
O B:ASP6 4.4 6.0 1.0
O B:GLY3 4.4 4.7 1.0
OD2 B:ASP6 4.5 8.2 1.0
CB B:ASP6 4.5 5.4 1.0
O B:HOH1789 4.5 31.2 1.0
O B:ASP2 4.5 6.1 1.0
O B:HOH1679 4.5 12.7 1.0
CB B:ALA144 4.5 7.3 1.0
CB B:ASP2 4.6 6.4 1.0
C B:ASP2 4.7 6.5 1.0
CG B:ASP6 4.7 6.4 1.0
CA B:ASP2 4.8 6.6 1.0
CG B:ASP2 4.8 8.8 1.0
OD1 B:ASP2 4.8 8.8 1.0
O B:HOH1733 4.9 13.0 1.0

Magnesium binding site 2 out of 2 in 2cz7

Go back to Magnesium Binding Sites List in 2cz7
Magnesium binding site 2 out of 2 in the Fe-Type Nhase Photo-Activated For 75MIN at 105K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fe-Type Nhase Photo-Activated For 75MIN at 105K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1619

b:24.2
occ:0.50
O B:HOH1935 1.9 13.1 0.5
O B:HOH1920 2.3 22.7 1.0
O B:HOH1773 2.5 33.8 1.0
O B:HOH1858 4.3 26.3 1.0
OE1 B:GLU96 4.4 11.6 1.0
O B:HOH1826 4.6 40.6 1.0

Reference:

M.Nojiri, Y.Kawano, K.Hashimoto, N.Kamiya. Active Center Structures of Photo-Reactive Nitrile Hydratase During Its Photo-Activation Process To Be Published.
Page generated: Mon Dec 14 07:19:51 2020

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