Magnesium in PDB 2d2f: Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8

The structure of Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8, PDB code: 2d2f was solved by S.Watanabe, A.Kita, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.87 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.336, 71.864, 49.776, 90.00, 105.71, 90.00
R / Rfree (%)	18.2 / 21.9

The binding sites of Magnesium atom in the Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8 (pdb code 2d2f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8, PDB code: 2d2f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:32.6 occ:1.00 O3B A:ADP737 2.2 43.0 1.0 OG A:SER43 2.6 23.5 1.0 O1B A:ADP737 2.9 48.5 1.0 PB A:ADP737 3.0 43.6 1.0 CB A:SER43 3.6 20.0 1.0 NZ A:LYS42 3.6 21.7 1.0 OG1 A:THR170 3.6 28.2 1.0 O A:HOH867 3.8 33.6 1.0 CE A:LYS42 3.8 22.8 1.0 CG2 A:THR170 3.8 8.8 1.0 CB A:THR170 3.9 14.5 1.0 O2B A:ADP737 3.9 47.3 1.0 CG A:LYS42 4.0 18.2 1.0 OD1 A:ASN38 4.2 22.4 1.0 N A:SER43 4.2 13.8 1.0 O3A A:ADP737 4.3 47.3 1.0 CD A:LYS42 4.5 14.0 1.0 CA A:SER43 4.5 14.3 1.0 O2A A:ADP737 4.5 46.0 1.0 CG A:ASN38 4.6 31.3 1.0 OD1 A:ASP168 4.8 18.4 1.0 CA A:ASN38 4.9 32.7 1.0 ND2 A:ASN38 5.0 30.3 1.0 MG A:MG502 5.0 24.4 1.0 PA A:ADP737 5.0 46.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:24.4 occ:1.00 O2B A:ADP737 2.2 47.3 1.0 NZ A:LYS42 2.3 21.7 1.0 N A:ASN38 2.8 23.3 1.0 CB A:ALA40 3.0 20.2 1.0 N A:ALA40 3.1 18.7 1.0 CA A:ASN38 3.2 32.7 1.0 CG A:LYS42 3.2 18.2 1.0 PB A:ADP737 3.4 43.6 1.0 CE A:LYS42 3.4 22.8 1.0 CD A:LYS42 3.5 14.0 1.0 C A:GLY36 3.5 14.2 1.0 N A:GLY39 3.5 21.8 1.0 CA A:ALA40 3.5 14.7 1.0 C A:ASN38 3.6 22.8 1.0 O1B A:ADP737 3.6 48.5 1.0 CA A:GLY36 3.7 15.7 1.0 N A:PRO37 3.7 15.5 1.0 N A:GLY41 3.8 12.5 1.0 O A:GLY36 3.8 16.2 1.0 N A:LYS42 3.9 13.7 1.0 C A:PRO37 4.0 21.6 1.0 C A:ALA40 4.0 16.0 1.0 CB A:LYS42 4.1 11.4 1.0 CD A:PRO37 4.1 20.2 1.0 C A:GLY39 4.3 29.0 1.0 CA A:PRO37 4.4 16.6 1.0 O3B A:ADP737 4.4 43.0 1.0 O A:ASN38 4.4 25.0 1.0 O3A A:ADP737 4.5 47.3 1.0 CA A:GLY39 4.6 29.8 1.0 OD1 A:ASN38 4.6 22.4 1.0 CB A:ASN38 4.6 31.7 1.0 N A:GLY36 4.7 13.5 1.0 CG A:PRO37 4.7 21.6 1.0 CA A:LYS42 4.7 14.3 1.0 CA A:GLY41 4.9 18.2 1.0 C A:GLY41 4.9 16.8 1.0 MG A:MG501 5.0 32.6 1.0

S.Watanabe, A.Kita, K.Miki. Crystal Structure of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus HB8. J.Mol.Biol. V. 353 1043 2005.
ISSN: ISSN 0022-2836
PubMed: 16216272
DOI: 10.1016/J.JMB.2005.09.017