Atomistry » Magnesium » PDB 2cw0-2dkg » 2d34
Atomistry »
  Magnesium »
    PDB 2cw0-2dkg »
      2d34 »

Magnesium in PDB 2d34: Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies

Protein crystallography data

The structure of Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies, PDB code: 2d34 was solved by A.H.-J.Wang, Y.-G.Gao, Y.-C.Liaw, Y.-K.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.40
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 28.021, 28.021, 52.471, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies (pdb code 2d34). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies, PDB code: 2d34:

Magnesium binding site 1 out of 1 in 2d34

Go back to Magnesium Binding Sites List in 2d34
Magnesium binding site 1 out of 1 in the Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg8

b:22.4
occ:1.00
O A:HOH11 2.7 30.6 1.0
O A:HOH10 2.8 30.0 1.0
N7 A:DG6 2.9 7.5 1.0
O A:HOH9 2.9 25.2 1.0
O4 A:DM17 3.0 9.8 1.0
O6 A:DM17 3.2 9.2 1.0
C21 A:DM17 3.3 9.5 1.0
O6 A:DG6 3.7 7.2 1.0
C4 A:DM17 3.8 9.1 1.0
C8 A:DG6 3.8 7.0 1.0
C5 A:DG6 3.8 6.9 1.0
C6 A:DM17 4.0 8.2 1.0
C6 A:DG6 4.2 6.6 1.0
C5 A:DM17 4.3 8.8 1.0
O A:HOH46 4.5 42.8 1.0
O A:HOH58 4.6 48.8 1.0
C2' A:DC5 4.6 10.9 1.0
O A:HOH38 4.6 38.6 1.0
C3 A:DM17 4.8 9.2 1.0
OP2 A:DG6 4.9 15.1 1.0
N9 A:DG6 5.0 7.4 1.0
O8 A:DM17 5.0 8.1 1.0

Reference:

A.H.Wang, Y.G.Gao, Y.C.Liaw, Y.K.Li. Formaldehyde Cross-Links Daunorubicin and Dna Efficiently: Hplc and X-Ray Diffraction Studies. Biochemistry V. 30 3812 1991.
ISSN: ISSN 0006-2960
PubMed: 2018756
DOI: 10.1021/BI00230A002
Page generated: Tue Aug 13 22:25:12 2024

Last articles

Cl in 3OG3
Cl in 3OAZ
Cl in 3OEX
Cl in 3OFM
Cl in 3OEU
Cl in 3OBK
Cl in 3ODG
Cl in 3OCT
Cl in 3OCL
Cl in 3OCH
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy