Magnesium in the structure of Formaldehyde Cross-Links Daunorubicin And Dna Efficiently: Hplc and X-Ray Diffraction Studies (pdb 2d34)

The binding sites of Magnesium atom in the structure of Formaldehyde Cross-Links Daunorubicin And Dna Efficiently: Hplc and X-Ray Diffraction Studies (pdb code 2d34). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 2d34 structure was solved by A.H.-J.WANG, Y.-G.GAO, Y.-C.LIAW, Y.-K.LI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 1.4 Space group P41212 a (A) 28.021 b (A) 28.021 c (A) 52.471 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) n/a Magnesium Binding Sites: Magnesium binding site 1 out of 1 in 2d34 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 2d34. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Dc5, A: Dg6, A: Dm17, A: Hoh9, A: Hoh10, A: Hoh11, A: Hoh38, A: Hoh46, A: Hoh58, conact list: Atom Atom Distance (A) Mg C2' A:Dc5 4.57 Mg N9 A:Dg6 4.99 Mg C8 A:Dg6 3.82 Mg C6 A:Dg6 4.18 Mg C5 A:Dg6 3.83 Mg N7 A:Dg6 2.86 Mg OP2 A:Dg6 4.91 Mg O6 A:Dg6 3.70 Mg O8 A:Dm17 4.99 Mg C6 A:Dm17 3.97 Mg C5 A:Dm17 4.30 Mg C4 A:Dm17 3.80 Mg O4 A:Dm17 2.96 Mg C3 A:Dm17 4.83 Mg C21 A:Dm17 3.32 Mg O6 A:Dm17 3.24 Mg O A:Hoh9 2.92 Mg O A:Hoh10 2.78 Mg O A:Hoh11 2.74 Mg O A:Hoh38 4.62 Mg O A:Hoh46 4.52 Mg O A:Hoh58 4.57 interactive model: