Magnesium in PDB 2d4n: Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue

All present enzymatic activity of Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue:
3.6.1.23;

The structure of Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue, PDB code: 2d4n was solved by V.Nemeth, O.Barabas, G.B.Vertessy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.53
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	61.071, 61.071, 64.357, 90.00, 90.00, 120.00
R / Rfree (%)	16.4 / 18.7

The binding sites of Magnesium atom in the Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue (pdb code 2d4n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue, PDB code: 2d4n:

Magnesium binding site 1 out of 1 in the Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of M-Pmv Dutpase Complexed with Dupnpp, Substrate Analogue within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg999 b:16.9 occ:1.00 O2G A:DUP777 2.0 22.4 1.0 O A:HOH1127 2.0 17.5 1.0 O1B A:DUP777 2.1 17.0 1.0 O1A A:DUP777 2.1 15.0 1.0 O A:HOH1130 2.1 17.2 1.0 O A:HOH1128 2.1 16.4 1.0 PG A:DUP777 3.1 26.8 1.0 PB A:DUP777 3.1 17.6 1.0 PA A:DUP777 3.3 15.2 1.0 O3B A:DUP777 3.5 23.6 1.0 O1G A:DUP777 3.5 35.9 1.0 N3A A:DUP777 3.6 14.4 1.0 O A:HOH1013 3.8 23.7 1.0 O2A A:DUP777 4.3 15.8 1.0 O3G A:DUP777 4.4 32.4 1.0 O2B A:DUP777 4.5 21.6 1.0 O5' A:DUP777 4.5 15.7 1.0 O A:HOH1131 4.6 49.2 1.0 C5' A:DUP777 4.6 18.2 1.0

V.Nemeth-Pongracz, O.Barabas, M.Fuxreiter, I.Simon, I.Pichova, M.Rumlova, H.Zabranska, D.Svergun, M.Petoukhov, V.Harmat, E.Klement, E.Hunyadi-Gulyas, K.F.Medzihradszky, E.Konya, B.G.Vertessy. Flexible Segments Modulate Co-Folding of Dutpase and Nucleocapsid Proteins. Nucleic Acids Res. V. 35 495 2007.
ISSN: ISSN 0305-1048
PubMed: 17169987
DOI: 10.1093/NAR/GKL1074