Magnesium in PDB 2ddx: Crystal Structure of Beta-1,3-Xylanase From Vibrio Sp. Ax-4

The structure of Crystal Structure of Beta-1,3-Xylanase From Vibrio Sp. Ax-4, PDB code: 2ddx was solved by K.Sakaguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.85 / 0.86
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.873, 75.654, 82.119, 90.00, 90.00, 90.00
R / Rfree (%)	13.9 / 14.8

The binding sites of Magnesium atom in the Crystal Structure of Beta-1,3-Xylanase From Vibrio Sp. Ax-4 (pdb code 2ddx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Beta-1,3-Xylanase From Vibrio Sp. Ax-4, PDB code: 2ddx:

Magnesium binding site 1 out of 1 in the Crystal Structure of Beta-1,3-Xylanase From Vibrio Sp. Ax-4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Beta-1,3-Xylanase From Vibrio Sp. Ax-4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:5.5 occ:1.00 OG A:SER150 3.1 6.2 1.0 N A:LEU1 3.1 7.7 1.0 N A:GLY3 3.3 8.7 1.0 N A:LEU5 3.3 7.6 1.0 N A:VAL4 3.4 8.3 1.0 CA A:LEU1 3.5 8.0 1.0 C A:LEU1 3.5 8.0 1.0 CB A:SER150 3.6 5.5 1.0 CA A:GLY3 3.6 8.7 1.0 C A:GLY3 3.6 8.4 1.0 CG A:ASP177 3.6 6.3 1.0 OD2 A:ASP177 3.8 6.6 1.0 O A:LEU1 3.8 8.2 1.0 CB A:LEU5 3.8 7.5 1.0 CB A:ASP177 3.9 5.7 1.0 CA A:SER150 4.0 5.4 1.0 N A:ASP2 4.0 8.4 1.0 OD1 A:ASP177 4.0 8.2 1.0 CA A:LEU5 4.0 7.5 1.0 C A:VAL4 4.3 8.1 1.0 CA A:VAL4 4.3 8.5 1.0 O A:GLY3 4.3 9.0 1.0 C A:ASP2 4.4 9.0 1.0 C A:LEU5 4.4 7.2 1.0 CG A:LEU5 4.4 8.2 1.0 CG2 A:VAL4 4.4 9.1 1.0 N A:VAL6 4.5 7.4 1.0 CG2 A:VAL6 4.5 7.8 1.0 CA A:ASP2 4.8 8.9 1.0 O A:ILE149 4.8 6.3 1.0 N A:SER150 4.9 5.4 1.0 CD1 A:LEU5 4.9 9.2 1.0

K.Sakaguchi, T.Kawamura, N.Watanabe, M.Kiyohara, K.Yamaguchi, M.Ito, I.Tanaka. Atomic Resolution Analysis of Beta-1,3-Xylanase Catalytic Module From Vibrio Sp. Ax-4 To Be Published.