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Magnesium in PDB 2dei: Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose

Enzymatic activity of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose

All present enzymatic activity of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose:
2.7.1.6;

Protein crystallography data

The structure of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose, PDB code: 2dei was solved by E.Inagaki, K.Sakamoto, A.Shinkai, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.333, 39.067, 81.418, 90.00, 109.50, 90.00
R / Rfree (%) 17.7 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose (pdb code 2dei). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose, PDB code: 2dei:

Magnesium binding site 1 out of 1 in 2dei

Go back to Magnesium Binding Sites List in 2dei
Magnesium binding site 1 out of 1 in the Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pnp and Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:18.4
occ:1.00
 MG A:MAP402 0.0 18.4 1.0
O A:HOH1217 2.0 16.2 1.0
O2B A:MAP402 2.0 17.9 1.0
O2G A:MAP402 2.0 24.2 1.0
O A:HOH1169 2.0 23.4 1.0
O2A A:MAP402 2.1 18.6 1.0
OG A:SER105 2.4 14.5 1.0
PG A:MAP402 3.1 26.2 1.0
PB A:MAP402 3.2 19.2 1.0
PA A:MAP402 3.3 20.4 1.0
CB A:SER105 3.4 12.1 1.0
O3G A:MAP402 3.5 22.4 1.0
O3A A:MAP402 3.5 18.1 1.0
N3B A:MAP402 3.7 21.3 1.0
O A:HOH1159 3.8 27.2 1.0
N A:SER105 4.0 10.0 1.0
O5' A:MAP402 4.0 20.1 1.0
O A:HOH1058 4.1 20.3 1.0
CA A:SER103 4.2 8.4 1.0
CA A:SER105 4.3 10.0 1.0
OG A:SER103 4.3 6.5 0.5
OE2 A:GLU137 4.4 21.3 1.0
O1G A:MAP402 4.4 28.1 1.0
O1A A:MAP402 4.5 21.5 1.0
OD2 A:ASP149 4.5 13.2 1.0
O1B A:MAP402 4.6 21.6 1.0
C A:SER103 4.7 9.3 1.0
O A:HOH1161 4.7 24.7 1.0
N A:SER104 4.8 10.1 1.0
CB A:SER103 4.8 8.3 1.0
OG A:SER103 4.8 9.6 0.5
O A:HOH1259 4.8 46.1 1.0
N A:ALA106 4.8 9.1 1.0
N A:SER103 4.9 8.5 1.0

Reference:

E.Inagaki, K.Sakamoto, A.Shinkai, S.Yokoyama. Crystal Structure of Galaktokinase From Pyrococcus Horikoshii To Be Published.
Page generated: Tue Aug 13 22:29:06 2024

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