Magnesium in PDB 2dej: Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose

All present enzymatic activity of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose:
2.7.1.6;

The structure of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose, PDB code: 2dej was solved by E.Inagaki, K.Sakamoto, A.Shinkai, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	105.945, 38.997, 81.188, 90.00, 109.60, 90.00
R / Rfree (%)	18.7 / 22.8

The binding sites of Magnesium atom in the Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose (pdb code 2dej). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose, PDB code: 2dej:

Magnesium binding site 1 out of 1 in the Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Galaktokinase From Pyrococcus Horikoshii with Amp-Pn and Galactose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:26.6 occ:1.00 MG A:APW402 0.0 26.6 1.0 O2A A:APW402 2.1 27.0 1.0 O2B A:APW402 2.1 25.9 1.0 O A:HOH1194 2.2 33.0 1.0 OG A:SER105 2.3 16.9 1.0 O A:HOH1326 2.8 19.0 0.5 PB A:APW402 3.3 24.3 1.0 PA A:APW402 3.3 27.4 1.0 O A:HOH1326 3.3 13.8 0.5 CB A:SER105 3.4 12.5 1.0 O3A A:APW402 3.5 26.4 1.0 N3B A:APW402 3.6 29.1 1.0 N A:SER105 4.0 10.9 1.0 O5' A:APW402 4.0 27.3 1.0 O A:HOH1061 4.1 21.5 1.0 CA A:SER103 4.1 8.5 1.0 CA A:SER105 4.3 11.5 1.0 OG A:SER103 4.4 10.7 0.5 O A:HOH1063 4.5 21.7 1.0 N A:SER104 4.5 10.9 1.0 O1A A:APW402 4.5 27.9 1.0 C A:SER103 4.6 10.1 1.0 OD2 A:ASP149 4.6 13.7 1.0 OE2 A:GLU137 4.6 17.1 0.5 O1B A:APW402 4.6 29.9 1.0 OE2 A:GLU137 4.6 12.9 0.5 CB A:SER103 4.9 8.7 1.0 O A:HOH1184 4.9 31.3 1.0 N A:SER103 4.9 7.9 1.0 N A:ALA106 4.9 10.3 1.0

E.Inagaki, K.Sakamoto, A.Shinkai, S.Yokoyama. Crystal Structure of Galaktokinase From Pyrococcus Horikoshii To Be Published.