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Magnesium in PDB 2dsl: Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8

Protein crystallography data

The structure of Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8, PDB code: 2dsl was solved by K.Shimizu, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.56 / 1.70
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.670, 57.670, 139.696, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.5

Other elements in 2dsl:

The structure of Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8 (pdb code 2dsl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8, PDB code: 2dsl:

Magnesium binding site 1 out of 1 in 2dsl

Go back to Magnesium Binding Sites List in 2dsl
Magnesium binding site 1 out of 1 in the Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:14.4
occ:0.50
O A:HOH1049 2.0 17.8 1.0
O A:HOH1048 2.0 16.0 1.0
O A:HOH1046 2.1 15.3 0.5
O A:HOH1047 2.2 14.3 0.5
OD2 A:ASP30 4.2 17.9 1.0
O A:HOH1020 4.3 27.6 1.0
O A:ALA8 4.4 17.8 1.0
CB A:ALA8 5.0 19.2 1.0

Reference:

K.Shimizu, M.Sugahara, N.Kunishima. Mutant N33D Structure of Phenylacetic Acid Degradation Protein Paai From Thermus Thermophilus HB8 To Be Published.
Page generated: Tue Aug 13 22:35:34 2024

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