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Magnesium in PDB 2dy0: Crystal Structure of Project JW0458 From Escherichia Coli

Enzymatic activity of Crystal Structure of Project JW0458 From Escherichia Coli

All present enzymatic activity of Crystal Structure of Project JW0458 From Escherichia Coli:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of Project JW0458 From Escherichia Coli, PDB code: 2dy0 was solved by K.Shimizu, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.25
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 40.106, 48.192, 54.795, 109.40, 101.84, 110.56
R / Rfree (%) 19.8 / 20.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Project JW0458 From Escherichia Coli (pdb code 2dy0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Project JW0458 From Escherichia Coli, PDB code: 2dy0:

Magnesium binding site 1 out of 1 in 2dy0

Go back to Magnesium Binding Sites List in 2dy0
Magnesium binding site 1 out of 1 in the Crystal Structure of Project JW0458 From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Project JW0458 From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:19.5
occ:1.00
O A:HOH1171 2.2 13.2 1.0
O A:HOH1044 2.2 18.7 1.0
O A:HOH1032 2.2 12.5 1.0
O A:HOH1034 4.0 10.9 1.0
OD2 A:ASP46 4.1 8.6 1.0
OD1 A:ASP46 4.3 8.5 1.0
O B:HOH192 4.3 11.7 1.0
O B:HOH231 4.3 24.2 1.0
O B:HOH328 4.4 13.7 1.0
CG A:ASP46 4.6 6.4 1.0
O A:HOH1279 4.7 32.8 1.0

Reference:

K.Shimizu, N.Kunishima. Crystal Structure of JW0458 From Escherichia Coli To Be Published.
Page generated: Mon Dec 14 07:20:44 2020

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