Magnesium in PDB 2e5a: Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp

The structure of Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp, PDB code: 2e5a was solved by K.Fujiwara, H.Hosaka, M.Matsuda, M.Suzuki, A.Nakagawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.10
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.439, 81.439, 120.532, 90.00, 90.00, 120.00
R / Rfree (%)	21.9 / 26.3

The binding sites of Magnesium atom in the Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp (pdb code 2e5a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp, PDB code: 2e5a:

Magnesium binding site 1 out of 1 in the Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:38.3 occ:1.00 OD1 A:ASP127 2.6 34.6 1.0 O A:HOH5068 2.7 36.9 1.0 O A:ARG125 2.9 35.6 1.0 N A:THR139 3.0 30.4 1.0 C A:PHE126 3.5 35.8 1.0 CG A:ASP127 3.6 36.5 1.0 O A:PHE126 3.6 36.2 1.0 N A:ASP127 3.6 36.0 1.0 O A:THR139 3.7 28.8 1.0 CA A:GLY138 3.8 31.4 1.0 CA A:THR139 3.8 29.9 1.0 C A:GLY138 3.8 30.6 1.0 CB A:THR139 3.9 29.9 1.0 C A:ARG125 3.9 36.0 1.0 CA A:ASP127 4.0 36.6 1.0 CA A:PHE126 4.2 35.6 1.0 C A:THR139 4.2 29.4 1.0 NH1 A:ARG125 4.2 32.5 1.0 O A:HOH5051 4.2 43.8 1.0 CB A:PHE126 4.2 35.6 1.0 O10 A:LAQ2001 4.3 29.9 1.0 OD2 A:ASP127 4.3 35.9 1.0 NZ A:LYS135 4.4 35.1 1.0 CB A:ASP127 4.4 36.4 1.0 N A:PHE126 4.4 35.6 1.0 O1P A:LAQ2001 4.5 28.9 1.0 O A:HOH5012 4.6 36.5 1.0 O A:HOH5030 4.7 35.2 1.0 CZ A:ARG125 4.8 34.1 1.0 CG A:ARG125 4.8 35.1 1.0 O A:HOH5178 4.8 40.5 1.0 CG2 A:THR139 4.8 29.8 1.0 OG1 A:THR139 4.8 30.0 1.0 O A:SER137 4.9 33.5 1.0 C10 A:LAQ2001 4.9 30.9 1.0

K.Fujiwara, H.Hosaka, M.Matsuda, K.Okamura-Ikeda, Y.Motokawa, M.Suzuki, A.Nakagawa, H.Taniguchi. Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-Amp J.Mol.Biol. V. 371 222 2007.
ISSN: ISSN 0022-2836
PubMed: 17570395
DOI: 10.1016/J.JMB.2007.05.059