Magnesium in PDB 2e9s: Human Neuronal RAB6B in Three Intermediate Forms

The structure of Human Neuronal RAB6B in Three Intermediate Forms, PDB code: 2e9s was solved by F.M.Vellieux, S.Tcherniuk, I.Garcia-Saez, F.Kozielski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.74 / 1.78
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.808, 65.185, 108.672, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 23.1

The binding sites of Magnesium atom in the Human Neuronal RAB6B in Three Intermediate Forms (pdb code 2e9s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human Neuronal RAB6B in Three Intermediate Forms, PDB code: 2e9s:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Human Neuronal RAB6B in Three Intermediate Forms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Neuronal RAB6B in Three Intermediate Forms within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:16.1 occ:1.00 O3B A:GDP602 2.0 10.2 1.0 OG1 A:THR27 2.1 9.7 1.0 OG1 A:THR45 2.3 16.1 1.0 O A:HOH608 2.3 15.3 1.0 O A:HOH609 2.4 16.1 1.0 O3 A:NO3601 2.5 19.0 1.0 CB A:THR27 3.2 7.5 1.0 PB A:GDP602 3.3 11.5 1.0 CB A:THR45 3.3 21.0 1.0 N A:NO3601 3.4 19.7 1.0 O1B A:GDP602 3.5 14.8 1.0 N A:THR27 3.9 9.3 1.0 N A:THR45 3.9 20.9 1.0 OD1 A:ASP68 4.0 12.2 1.0 O1 A:NO3601 4.1 22.1 1.0 O1A A:GDP602 4.1 10.6 1.0 OD2 A:ASP68 4.1 13.1 1.0 O2 A:NO3601 4.1 21.8 1.0 CA A:THR27 4.2 9.5 1.0 O2B A:GDP602 4.2 8.6 1.0 CA A:THR45 4.2 21.2 1.0 O A:HOH621 4.3 19.9 1.0 CG2 A:THR27 4.3 8.4 1.0 O3A A:GDP602 4.3 11.8 1.0 CG2 A:THR45 4.4 19.9 1.0 CG A:ASP68 4.5 13.2 1.0 O A:THR69 4.6 18.1 1.0 O A:GLN43 4.6 22.0 1.0 PA A:GDP602 4.6 11.6 1.0 CE A:LYS26 4.8 13.6 1.0 O2A A:GDP602 4.8 12.5 1.0 CB A:LYS26 4.8 7.2 1.0 NZ A:LYS26 4.9 14.8 1.0 C A:ALA44 4.9 21.0 1.0

Magnesium binding site 2 out of 2 in the Human Neuronal RAB6B in Three Intermediate Forms


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Neuronal RAB6B in Three Intermediate Forms within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:22.9 occ:1.00 O3B B:GDP702 2.1 11.7 1.0 O B:HOH768 2.1 21.8 1.0 OG1 B:THR27 2.3 10.8 1.0 O B:HOH711 2.3 17.1 1.0 O B:HOH710 2.4 20.4 1.0 O B:HOH767 2.4 21.2 1.0 PB B:GDP702 3.2 12.2 1.0 O1B B:GDP702 3.3 13.6 1.0 CB B:THR27 3.4 8.6 1.0 O1A B:GDP702 4.0 11.5 1.0 OD1 B:ASP68 4.1 14.2 1.0 N B:THR27 4.2 8.9 1.0 O2B B:GDP702 4.2 12.3 1.0 O3A B:GDP702 4.3 10.3 1.0 OD2 B:ASP68 4.3 12.1 1.0 CG2 B:THR27 4.4 9.0 1.0 CA B:THR27 4.4 8.7 1.0 PA B:GDP702 4.5 11.9 1.0 O B:HOH774 4.5 23.5 1.0 O B:THR69 4.6 20.9 1.0 CG B:ASP68 4.6 12.5 1.0 O B:HOH709 4.7 22.3 1.0 O2A B:GDP702 4.8 9.7 1.0 CE B:LYS26 4.9 11.1 1.0 NZ B:LYS26 4.9 10.3 1.0

F.M.Vellieux, S.Tcherniuk, I.Garcia-Saez, F.Kozielski. 3D Structure of Human Neuronal RAB6B in Three Intermediate Forms To Be Published.