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Magnesium in PDB 2eh3: Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5

Protein crystallography data

The structure of Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5, PDB code: 2eh3 was solved by Y.Agari, A.Shinkai, S.Yokoyama, S.Kuramitsu, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.92 / 1.55
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 49.857, 54.919, 73.144, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5 (pdb code 2eh3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5, PDB code: 2eh3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2eh3

Go back to Magnesium Binding Sites List in 2eh3
Magnesium binding site 1 out of 2 in the Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:5.2
occ:1.00
OE1 A:GLU78 2.3 8.8 1.0
O A:HOH1046 2.4 14.5 1.0
O A:HOH1163 2.4 11.9 1.0
OE1 A:GLU75 2.4 10.2 1.0
OE2 A:GLU75 2.5 11.5 1.0
CD A:GLU75 2.8 12.3 1.0
CD A:GLU78 3.2 10.3 1.0
OE2 A:GLU78 3.4 7.6 1.0
O A:HOH1031 4.0 16.4 1.0
O A:HOH1022 4.2 13.1 1.0
O A:HOH1024 4.2 33.4 1.0
CG A:GLU75 4.3 11.2 1.0
MG A:MG1002 4.4 4.1 1.0
CG A:GLU78 4.6 8.7 1.0
O A:HOH1042 4.9 9.2 1.0

Magnesium binding site 2 out of 2 in 2eh3

Go back to Magnesium Binding Sites List in 2eh3
Magnesium binding site 2 out of 2 in the Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:4.1
occ:1.00
OE2 A:GLU78 2.3 7.6 1.0
O A:HOH1042 2.4 9.2 1.0
OE2 A:GLU82 2.5 9.4 1.0
CD A:GLU78 3.3 10.3 1.0
CD A:GLU82 3.5 9.2 1.0
OE1 A:GLU82 3.7 10.2 1.0
NZ A:LYS161 3.9 11.8 1.0
CG A:GLU78 4.0 8.7 1.0
OE1 A:GLU78 4.0 8.8 1.0
MG A:MG1001 4.4 5.2 1.0
O A:HOH1022 4.4 13.1 1.0
O A:HOH1031 4.5 16.4 1.0
CE A:LYS161 4.8 16.4 1.0
CG A:GLU82 4.9 10.4 1.0

Reference:

Y.Agari, A.Shinkai, S.Yokoyama, S.Kuramitsu. Crystal Structure of AQ_1058, A Transcriptional Regulator (Terr/Acrr Family) From Aquifex Aeolicus VF5 To Be Published.
Page generated: Tue Aug 13 22:46:04 2024

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