Magnesium in PDB 2f1j: Recombinase in Complex with Adp

The structure of Recombinase in Complex with Adp, PDB code: 2f1j was solved by X.Qian, Y.He, Y.Wu, Y.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	82.974, 82.974, 105.890, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 24.4

The binding sites of Magnesium atom in the Recombinase in Complex with Adp (pdb code 2f1j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Recombinase in Complex with Adp, PDB code: 2f1j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Recombinase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Recombinase in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:25.6 occ:1.00 O A:HOH608 1.9 25.6 1.0 O1B A:ADP401 2.0 27.1 1.0 O A:HOH603 2.1 25.7 1.0 O A:HOH602 2.1 19.6 1.0 OG1 A:THR112 2.2 27.6 1.0 O A:HOH601 2.2 12.6 1.0 PB A:ADP401 3.2 30.8 1.0 CB A:THR112 3.2 27.3 1.0 O3B A:ADP401 3.4 30.2 1.0 N A:THR112 3.9 27.0 1.0 CA A:THR112 4.1 27.3 1.0 O2A A:ADP401 4.1 33.7 1.0 OD1 A:ASP211 4.2 30.0 1.0 O2B A:ADP401 4.2 26.8 1.0 O A:HOH645 4.2 53.3 1.0 O3A A:ADP401 4.2 32.6 1.0 OD2 A:ASP211 4.3 29.9 1.0 CG2 A:THR112 4.3 28.5 1.0 OD2 A:ASP151 4.4 38.0 1.0 O1A A:ADP401 4.4 29.3 1.0 OG1 A:THR153 4.5 25.7 1.0 PA A:ADP401 4.5 31.4 1.0 CG A:ASP211 4.7 26.6 1.0 CE A:LYS111 4.7 18.9 1.0 NZ A:LYS111 4.7 16.5 1.0 CB A:LYS111 4.7 22.5 1.0 C A:LYS111 4.9 26.4 1.0 CE2 A:PHE107 5.0 56.0 1.0

Magnesium binding site 2 out of 2 in the Recombinase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Recombinase in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:38.4 occ:1.00 O A:HOH606 1.8 28.3 1.0 O A:HOH607 2.1 25.5 1.0 OD1 A:ASP246 2.1 29.5 1.0 O A:GLN98 2.1 28.1 1.0 O A:HOH604 2.1 33.6 1.0 O A:HOH605 2.2 27.1 1.0 CG A:ASP246 3.0 28.7 1.0 C A:GLN98 3.1 28.3 1.0 OD2 A:ASP246 3.3 24.5 1.0 N A:SER99 3.9 27.6 1.0 CA A:SER99 4.0 27.6 1.0 OG A:SER99 4.0 27.8 1.0 O A:HOH640 4.1 32.7 1.0 CA A:GLN98 4.1 28.2 1.0 O A:ASN242 4.3 33.1 1.0 CB A:GLN98 4.4 27.4 1.0 CB A:ASP246 4.4 26.3 1.0 ND2 A:ASN242 4.5 31.3 1.0 CB A:SER99 4.6 30.5 1.0 N A:ASP246 4.7 31.0 1.0 CA A:ASP246 4.8 32.0 1.0 CB A:ALA245 4.8 27.3 1.0

X.Qian, Y.He, Y.Wu, Y.Luo. ASP302 Determines Potassium Dependence of A Rada Recombinase From Methanococcus Voltae. J.Mol.Biol. V. 360 537 2006.
ISSN: ISSN 0022-2836
PubMed: 16782126
DOI: 10.1016/J.JMB.2006.05.058