Magnesium in PDB 2f7s: The Crystal Structure of Human RAB27B Bound to Gdp

The structure of The Crystal Structure of Human RAB27B Bound to Gdp, PDB code: 2f7s was solved by J.Wang, S.Ismail, Y.Shen, W.Tempel, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, A.Bochkarev, H.W.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.469, 64.023, 153.320, 90.00, 90.00, 90.00
R / Rfree (%)	24.5 / 29.2

The binding sites of Magnesium atom in the The Crystal Structure of Human RAB27B Bound to Gdp (pdb code 2f7s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Human RAB27B Bound to Gdp, PDB code: 2f7s:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of Human RAB27B Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Human RAB27B Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:63.1 occ:1.00 O3B A:GDP601 1.9 44.5 1.0 OG1 A:THR23 1.9 43.5 1.0 O B:HOH508 2.4 54.9 1.0 PB A:GDP601 3.2 45.1 1.0 CB A:THR23 3.2 42.9 1.0 O1B A:GDP601 3.4 40.6 1.0 O2A A:GDP601 3.8 46.7 1.0 N A:THR23 4.0 42.6 1.0 O2B A:GDP601 4.1 44.3 1.0 CG2 A:THR23 4.1 41.1 1.0 CA A:THR23 4.2 43.0 1.0 O B:HOH509 4.2 54.9 1.0 OD2 B:ASP74 4.2 36.4 1.0 O3A A:GDP601 4.2 46.3 1.0 O B:THR75 4.3 43.4 1.0 PA A:GDP601 4.3 48.4 1.0 OD1 B:ASP74 4.6 44.8 1.0 O1A A:GDP601 4.6 49.7 1.0 NE2 B:GLN78 4.7 51.9 1.0 NZ A:LYS22 4.8 32.9 1.0 CG B:ASP74 4.8 42.1 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of Human RAB27B Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Human RAB27B Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:55.9 occ:1.00 O3B B:GDP501 2.1 36.1 1.0 OG1 B:THR23 2.2 42.9 1.0 CB B:THR23 3.2 43.6 1.0 PB B:GDP501 3.4 39.4 1.0 O1B B:GDP501 3.5 33.7 1.0 O2A B:GDP501 4.0 43.1 1.0 OD2 A:ASP74 4.1 42.5 1.0 N B:THR23 4.1 44.2 1.0 O A:THR75 4.2 41.2 1.0 CG2 B:THR23 4.2 41.4 1.0 CA B:THR23 4.2 44.1 1.0 O2B B:GDP501 4.4 38.0 1.0 NE2 A:GLN78 4.4 43.9 1.0 OD1 A:ASP74 4.5 43.8 1.0 O3A B:GDP501 4.6 42.0 1.0 CG A:ASP74 4.7 41.9 1.0 PA B:GDP501 4.7 44.8 1.0 O1A B:GDP501 4.9 43.3 1.0

J.Wang, S.Ismail, Y.Shen, W.Tempel, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, A.Bochkarev, H.W.Park. The Crystal Structure of Human RAB27B To Be Published.