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Magnesium in PDB 2fdr: Crystal Structure of Conserved Haloacid Dehalogenase-Like Protein of Unknown Function ATU0790 From Agrobacterium Tumefaciens Str. C58

Protein crystallography data

The structure of Crystal Structure of Conserved Haloacid Dehalogenase-Like Protein of Unknown Function ATU0790 From Agrobacterium Tumefaciens Str. C58, PDB code: 2fdr was solved by B.Nocek, X.Xu, H.Zheng, A.Savchenko, A.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.20 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.237, 48.179, 104.420, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Conserved Haloacid Dehalogenase-Like Protein of Unknown Function ATU0790 From Agrobacterium Tumefaciens Str. C58 (pdb code 2fdr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Conserved Haloacid Dehalogenase-Like Protein of Unknown Function ATU0790 From Agrobacterium Tumefaciens Str. C58, PDB code: 2fdr:

Magnesium binding site 1 out of 1 in 2fdr

Go back to Magnesium Binding Sites List in 2fdr
Magnesium binding site 1 out of 1 in the Crystal Structure of Conserved Haloacid Dehalogenase-Like Protein of Unknown Function ATU0790 From Agrobacterium Tumefaciens Str. C58


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Conserved Haloacid Dehalogenase-Like Protein of Unknown Function ATU0790 From Agrobacterium Tumefaciens Str. C58 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:23.9
occ:1.00
OD2 A:ASP10 2.2 28.8 1.0
OD1 A:ASP168 2.2 21.8 1.0
O A:ASP12 2.2 22.1 1.0
O A:HOH1105 2.2 28.9 1.0
O A:HOH1118 2.9 37.3 1.0
CG A:ASP168 3.2 20.2 1.0
CG A:ASP10 3.3 24.3 1.0
C A:ASP12 3.4 21.7 1.0
OD2 A:ASP168 3.5 23.6 1.0
CB A:ASP12 3.9 23.9 1.0
OE2 A:GLU167 4.1 27.4 1.0
OD1 A:ASP10 4.1 26.3 1.0
CA A:ASP12 4.1 22.3 1.0
OE2 A:GLU19 4.1 34.3 1.0
CB A:ASP10 4.2 21.9 1.0
CB A:SER169 4.4 20.9 1.0
N A:ASP12 4.4 21.8 1.0
N A:GLY13 4.4 20.0 1.0
O A:HOH1050 4.5 19.8 1.0
CB A:ASP168 4.5 18.6 1.0
O A:HOH1052 4.5 25.3 1.0
OG A:SER169 4.6 25.1 1.0
N A:SER169 4.7 19.8 1.0
CA A:GLY13 4.7 19.2 1.0
N A:ASP168 4.7 18.0 1.0
CG2 A:VAL14 4.9 17.4 1.0
C A:ASP168 5.0 19.0 1.0
CA A:ASP168 5.0 19.0 1.0
CD A:GLU19 5.0 33.3 1.0

Reference:

B.Nocek, X.Xu, H.Zheng, A.Savchenko, A.Edwards, A.Joachimiak. Crystal Structure of Hydrolases/Phosphatases-Like Fold Protein From Agrobacterium Tumefaciens Str. C58 To Be Published.
Page generated: Mon Dec 14 07:22:45 2020

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