Magnesium in PDB 2fe4: The Crystal Structure of Human Neuronal RAB6B in Its Inactive Gdp-Bound Form

The structure of The Crystal Structure of Human Neuronal RAB6B in Its Inactive Gdp-Bound Form, PDB code: 2fe4 was solved by I.Garcia-Saez, F.Tcherniuk, F.Kozielski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	36.036, 61.125, 66.634, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 25.7

The binding sites of Magnesium atom in the The Crystal Structure of Human Neuronal RAB6B in Its Inactive Gdp-Bound Form (pdb code 2fe4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Human Neuronal RAB6B in Its Inactive Gdp-Bound Form, PDB code: 2fe4:

Magnesium binding site 1 out of 1 in the The Crystal Structure of Human Neuronal RAB6B in Its Inactive Gdp-Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Human Neuronal RAB6B in Its Inactive Gdp-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:32.1 occ:1.00 O3B A:GDP201 2.2 11.0 1.0 OG1 A:THR27 2.3 18.0 1.0 O A:HOH221 2.4 21.3 1.0 O A:HOH229 2.4 22.2 1.0 O3 A:NO3203 2.5 30.8 1.0 OG1 A:THR45 2.5 66.4 0.5 CG2 A:THR45 2.6 66.3 0.5 CB A:THR45 3.1 66.9 0.5 CB A:THR27 3.3 14.6 1.0 PB A:GDP201 3.3 14.7 1.0 N A:NO3203 3.4 32.0 1.0 O1B A:GDP201 3.5 13.0 1.0 N A:THR27 3.9 10.7 1.0 O2 A:NO3203 3.9 29.7 1.0 O A:GLN43 3.9 68.7 1.0 OD1 A:ASP68 4.0 21.0 1.0 OD2 A:ASP68 4.0 15.0 1.0 O1A A:GDP201 4.1 11.5 1.0 N A:THR45 4.1 67.5 1.0 CA A:THR27 4.1 13.8 1.0 CA A:THR45 4.2 67.8 1.0 O3A A:GDP201 4.3 13.4 1.0 O1 A:NO3203 4.3 34.1 1.0 O2B A:GDP201 4.4 19.3 1.0 CG A:ASP68 4.4 21.4 1.0 CG2 A:THR27 4.4 13.6 1.0 O2A A:GDP201 4.4 13.5 1.0 PA A:GDP201 4.5 9.8 1.0 CG A:GLN43 4.7 63.6 0.5 O A:THR69 4.8 37.3 1.0 CB A:LYS26 4.9 11.2 1.0 C A:GLN43 4.9 67.0 1.0 C A:LYS26 5.0 10.9 1.0 O A:THR45 5.0 69.5 1.0 C A:THR45 5.0 68.6 1.0

I.Garcia-Saez, S.Tcherniuk, F.Kozielski. The Structure of Human Neuronal RAB6B in the Active and Inactive Form. Acta Crystallogr.,Sect.D V. 62 725 2006.
ISSN: ISSN 0907-4449
PubMed: 16790928
DOI: 10.1107/S0907444906015319