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Magnesium in PDB 2fea: Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution, PDB code: 2fea was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.95 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.013, 43.104, 109.553, 90.00, 98.91, 90.00
R / Rfree (%) 16 / 21.7

Other elements in 2fea:

The structure of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution (pdb code 2fea). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution, PDB code: 2fea:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2fea

Go back to Magnesium Binding Sites List in 2fea
Magnesium binding site 1 out of 2 in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:44.5
occ:1.00
O A:ASP13 2.2 38.5 1.0
OD1 A:ASP170 2.3 41.2 1.0
OD2 A:ASP11 2.3 37.5 1.0
O A:HOH1453 2.5 54.1 1.0
OG A:SER171 2.6 42.4 1.0
CG A:ASP170 3.1 41.9 1.0
OD2 A:ASP170 3.2 40.8 1.0
C A:ASP13 3.4 40.0 1.0
CG A:ASP11 3.4 36.0 1.0
O A:HOH1312 3.8 26.6 1.0
CB A:SER171 4.0 39.2 1.0
OD1 A:ASP11 4.1 42.1 1.0
OG1 A:THR15 4.2 42.9 1.0
CB A:ASP13 4.3 40.6 1.0
N A:SER171 4.3 36.5 1.0
N A:GLY14 4.3 37.3 1.0
CA A:GLY14 4.3 40.6 1.0
CA A:ASP13 4.3 38.3 1.0
CB A:ASP11 4.4 33.1 1.0
CB A:ASP170 4.5 34.4 1.0
N A:ASP13 4.5 38.6 1.0
C A:GLY14 4.6 41.6 1.0
O A:HOH1313 4.6 26.5 1.0
N A:THR15 4.6 38.7 1.0
CA A:SER171 4.6 34.6 1.0
O A:HOH1347 4.8 37.1 1.0
N A:ASP170 4.8 35.1 1.0
C A:ASP170 4.8 36.5 1.0
CA A:ASP170 4.9 35.8 1.0
C A:PHE12 5.0 35.5 1.0

Magnesium binding site 2 out of 2 in 2fea

Go back to Magnesium Binding Sites List in 2fea
Magnesium binding site 2 out of 2 in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2301

b:42.6
occ:1.00
O B:HOH2354 2.2 39.2 1.0
O B:ASP13 2.2 36.5 1.0
OD2 B:ASP11 2.3 39.5 1.0
OD1 B:ASP170 2.4 38.0 1.0
O B:HOH2322 2.5 30.0 1.0
CG B:ASP170 3.3 41.4 1.0
OD2 B:ASP170 3.4 40.1 1.0
CG B:ASP11 3.4 35.6 1.0
C B:ASP13 3.4 36.4 1.0
O B:HOH2311 3.6 23.9 1.0
CB B:SER171 3.7 39.2 1.0
O B:HOH2462 3.8 53.9 1.0
O B:HOH2334 3.8 35.8 1.0
OD1 B:ASP11 4.1 38.0 1.0
CA B:GLY14 4.2 35.8 1.0
N B:GLY14 4.2 35.4 1.0
N B:SER171 4.3 35.7 1.0
O B:HOH2343 4.4 37.6 1.0
OG1 B:THR15 4.4 32.7 1.0
O B:HOH2336 4.4 35.3 1.0
CA B:ASP13 4.5 37.0 1.0
CB B:ASP11 4.5 31.1 1.0
N B:THR15 4.5 37.5 1.0
C B:GLY14 4.5 34.2 1.0
CA B:SER171 4.6 37.2 1.0
CB B:ASP170 4.7 32.6 1.0
N B:ASP13 4.7 38.1 1.0
CB B:ASP13 4.8 39.8 1.0
OG B:SER171 4.8 45.0 1.0
O B:HOH2466 4.8 54.1 1.0

Reference:

Q.Xu, K.S.Saikatendu, S.S.Krishna, D.Mcmullan, P.Abdubek, S.Agarwalla, E.Ambing, T.Astakhova, H.L.Axelrod, D.Carlton, H.J.Chiu, T.Clayton, M.Didonato, L.Duan, M.A.Elsliger, J.Feuerhelm, S.K.Grzechnik, J.Hale, E.Hampton, G.W.Han, J.Haugen, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, E.Koesema, M.D.Miller, A.T.Morse, E.Nigoghossian, L.Okach, S.Oommachen, J.Paulsen, R.Reyes, C.L.Rife, R.Schwarzenbacher, H.Van Den Bedem, A.White, G.Wolf, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.0 A Resolution Provides A Structural Basis For Bipartite Phosphomonoester Hydrolysis of 2-Hydroxy-3-Keto-5-Methylthiopentenyl-1-Phosphate. Proteins V. 69 433 2007.
ISSN: ISSN 0887-3585
PubMed: 17654724
DOI: 10.1002/PROT.21602
Page generated: Mon Dec 14 07:22:47 2020

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