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Magnesium in PDB 2fh5: The Structure of the Mammalian Srp Receptor

Protein crystallography data

The structure of The Structure of the Mammalian Srp Receptor, PDB code: 2fh5 was solved by O.Schlenker, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.76 / 2.45
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 68.092, 118.348, 120.413, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 23.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of the Mammalian Srp Receptor (pdb code 2fh5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of the Mammalian Srp Receptor, PDB code: 2fh5:

Magnesium binding site 1 out of 1 in 2fh5

Go back to Magnesium Binding Sites List in 2fh5
Magnesium binding site 1 out of 1 in the The Structure of the Mammalian Srp Receptor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the Mammalian Srp Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg270

b:39.2
occ:1.00
O B:HOH358 2.1 36.2 1.0
O B:HOH357 2.1 43.5 1.0
O2G B:GTP301 2.1 37.0 1.0
OG1 B:THR76 2.2 36.0 1.0
O2B B:GTP301 2.2 40.3 1.0
OG B:SER93 2.3 38.7 1.0
CB B:SER93 3.1 35.2 1.0
PG B:GTP301 3.3 36.0 1.0
CB B:THR76 3.3 35.4 1.0
PB B:GTP301 3.3 38.1 1.0
O3B B:GTP301 3.5 40.0 1.0
O3G B:GTP301 3.9 49.9 1.0
OD2 B:ASP115 3.9 62.9 1.0
N B:SER93 3.9 37.2 1.0
N B:THR76 4.0 42.9 1.0
CA B:SER93 4.1 35.8 1.0
O A:GLY11 4.2 37.9 1.0
OD1 B:ASP115 4.2 50.6 1.0
CA B:THR76 4.2 38.1 1.0
O B:HOH313 4.3 53.4 1.0
CG2 B:THR76 4.3 28.7 1.0
O2A B:GTP301 4.3 34.6 1.0
O3A B:GTP301 4.3 39.8 1.0
O1B B:GTP301 4.4 41.1 1.0
O1G B:GTP301 4.5 39.6 1.0
CG B:ASP115 4.5 54.0 1.0
O B:GLN91 4.5 36.1 1.0
PA B:GTP301 4.7 36.8 1.0
O1A B:GTP301 4.7 36.1 1.0
C B:THR92 5.0 39.2 1.0
CB B:LYS75 5.0 32.7 1.0

Reference:

O.Schlenker, A.Hendricks, I.Sinning, K.Wild. The Structure of the Mammalian Signal Recognition Particle (Srp) Receptor As Prototype For the Interaction of Small Gtpases with Longin Domains. J.Biol.Chem. V. 281 8898 2006.
ISSN: ISSN 0021-9258
PubMed: 16439358
DOI: 10.1074/JBC.M512415200
Page generated: Mon Dec 14 07:22:51 2020

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