Magnesium in PDB 2fkw: Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Protein crystallography data
The structure of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases, PDB code: 2fkw
was solved by
M.Z.Papiz,
V.Cherezov,
J.Clogston,
M.Caffrey,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
2.45
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.443,
126.384,
129.705,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.3 /
25.4
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
27;
Binding sites:
The binding sites of Magnesium atom in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
(pdb code 2fkw). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 27 binding sites of Magnesium where determined in the
Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases, PDB code: 2fkw:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 1 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1501
b:39.7
occ:1.00
|
MG
|
A:BCL1501
|
0.0
|
39.7
|
1.0
|
NB
|
A:BCL1501
|
2.0
|
37.3
|
1.0
|
ND
|
A:BCL1501
|
2.0
|
37.0
|
1.0
|
NC
|
A:BCL1501
|
2.1
|
40.9
|
1.0
|
NA
|
A:BCL1501
|
2.2
|
41.8
|
1.0
|
NE2
|
A:HIS31
|
2.4
|
43.3
|
1.0
|
C4D
|
A:BCL1501
|
2.9
|
39.9
|
1.0
|
C1B
|
A:BCL1501
|
3.0
|
35.5
|
1.0
|
C4B
|
A:BCL1501
|
3.0
|
42.2
|
1.0
|
C1C
|
A:BCL1501
|
3.1
|
42.2
|
1.0
|
C1D
|
A:BCL1501
|
3.1
|
40.0
|
1.0
|
C4A
|
A:BCL1501
|
3.1
|
37.8
|
1.0
|
C4C
|
A:BCL1501
|
3.2
|
43.9
|
1.0
|
C1A
|
A:BCL1501
|
3.2
|
37.2
|
1.0
|
CE1
|
A:HIS31
|
3.3
|
42.7
|
1.0
|
CHC
|
A:BCL1501
|
3.4
|
42.5
|
1.0
|
CD2
|
A:HIS31
|
3.4
|
43.2
|
1.0
|
CHB
|
A:BCL1501
|
3.5
|
37.6
|
1.0
|
CHA
|
A:BCL1501
|
3.6
|
39.6
|
1.0
|
CHD
|
A:BCL1501
|
3.6
|
38.0
|
1.0
|
C9
|
B:LDA1801
|
4.0
|
53.6
|
1.0
|
C10
|
B:LDA1801
|
4.1
|
50.8
|
1.0
|
C2B
|
A:BCL1501
|
4.2
|
33.5
|
1.0
|
C3B
|
A:BCL1501
|
4.2
|
35.8
|
1.0
|
C3D
|
A:BCL1501
|
4.2
|
40.6
|
1.0
|
CMD
|
B:BCL1601
|
4.3
|
42.2
|
1.0
|
C2D
|
A:BCL1501
|
4.4
|
39.2
|
1.0
|
ND1
|
A:HIS31
|
4.4
|
38.5
|
1.0
|
C3A
|
A:BCL1501
|
4.5
|
41.4
|
1.0
|
C2C
|
A:BCL1501
|
4.5
|
42.1
|
1.0
|
C3C
|
A:BCL1501
|
4.5
|
46.6
|
1.0
|
C2A
|
A:BCL1501
|
4.6
|
37.9
|
1.0
|
CG
|
A:HIS31
|
4.6
|
38.3
|
1.0
|
CBD
|
A:BCL1501
|
4.9
|
41.6
|
1.0
|
|
Magnesium binding site 2 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 2 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1701
b:45.9
occ:1.00
|
MG
|
A:BCL1701
|
0.0
|
45.9
|
1.0
|
NB
|
A:BCL1701
|
2.0
|
46.0
|
1.0
|
ND
|
A:BCL1701
|
2.1
|
49.2
|
1.0
|
NC
|
A:BCL1701
|
2.1
|
48.9
|
1.0
|
NA
|
A:BCL1701
|
2.2
|
46.4
|
1.0
|
ON2
|
A:CXM1
|
2.2
|
52.1
|
1.0
|
C4D
|
A:BCL1701
|
3.0
|
48.1
|
1.0
|
C4B
|
A:BCL1701
|
3.0
|
47.6
|
1.0
|
C1B
|
A:BCL1701
|
3.0
|
49.9
|
1.0
|
C1C
|
A:BCL1701
|
3.1
|
48.5
|
1.0
|
C1D
|
A:BCL1701
|
3.2
|
49.2
|
1.0
|
C4C
|
A:BCL1701
|
3.2
|
48.8
|
1.0
|
C4A
|
A:BCL1701
|
3.2
|
46.4
|
1.0
|
C1A
|
A:BCL1701
|
3.2
|
44.9
|
1.0
|
CN
|
A:CXM1
|
3.2
|
48.3
|
1.0
|
CHC
|
A:BCL1701
|
3.5
|
47.9
|
1.0
|
CHA
|
A:BCL1701
|
3.5
|
46.1
|
1.0
|
CHB
|
A:BCL1701
|
3.6
|
48.0
|
1.0
|
N
|
A:CXM1
|
3.6
|
47.5
|
1.0
|
CHD
|
A:BCL1701
|
3.6
|
52.1
|
1.0
|
C12
|
B:BCL1601
|
3.8
|
66.6
|
1.0
|
O
|
A:HOH1821
|
4.0
|
40.6
|
1.0
|
C15
|
B:BCL1601
|
4.3
|
64.0
|
1.0
|
C3D
|
A:BCL1701
|
4.3
|
48.2
|
1.0
|
C3B
|
A:BCL1701
|
4.3
|
48.9
|
1.0
|
ON1
|
A:CXM1
|
4.3
|
45.9
|
1.0
|
C2B
|
A:BCL1701
|
4.3
|
49.9
|
1.0
|
C3C
|
A:BCL1701
|
4.4
|
49.6
|
1.0
|
C2C
|
A:BCL1701
|
4.4
|
49.8
|
1.0
|
C2D
|
A:BCL1701
|
4.4
|
50.0
|
1.0
|
C3A
|
A:BCL1701
|
4.5
|
46.9
|
1.0
|
C2A
|
A:BCL1701
|
4.6
|
42.7
|
1.0
|
C11
|
B:BCL1601
|
4.6
|
67.3
|
1.0
|
CG
|
A:GLN3
|
4.6
|
45.2
|
1.0
|
C13
|
B:BCL1601
|
4.7
|
67.3
|
1.0
|
C16
|
B:BCL1601
|
4.7
|
61.6
|
1.0
|
O
|
A:HOH1831
|
4.7
|
0.0
|
1.0
|
CBD
|
A:BCL1701
|
5.0
|
46.2
|
1.0
|
|
Magnesium binding site 3 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 3 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1601
b:40.9
occ:1.00
|
MG
|
B:BCL1601
|
0.0
|
40.9
|
1.0
|
NB
|
B:BCL1601
|
2.0
|
39.4
|
1.0
|
ND
|
B:BCL1601
|
2.1
|
40.3
|
1.0
|
NC
|
B:BCL1601
|
2.1
|
38.8
|
1.0
|
NE2
|
B:HIS30
|
2.1
|
48.6
|
1.0
|
NA
|
B:BCL1601
|
2.1
|
36.6
|
1.0
|
CE1
|
B:HIS30
|
2.9
|
50.8
|
1.0
|
C4B
|
B:BCL1601
|
2.9
|
41.1
|
1.0
|
C1B
|
B:BCL1601
|
3.0
|
38.4
|
1.0
|
C4D
|
B:BCL1601
|
3.0
|
39.2
|
1.0
|
C1C
|
B:BCL1601
|
3.1
|
37.5
|
1.0
|
C4A
|
B:BCL1601
|
3.1
|
36.8
|
1.0
|
C1D
|
B:BCL1601
|
3.2
|
40.8
|
1.0
|
C4C
|
B:BCL1601
|
3.2
|
35.5
|
1.0
|
C1A
|
B:BCL1601
|
3.2
|
40.0
|
1.0
|
CD2
|
B:HIS30
|
3.3
|
46.0
|
1.0
|
CHC
|
B:BCL1601
|
3.4
|
44.2
|
1.0
|
CHB
|
B:BCL1601
|
3.5
|
37.5
|
1.0
|
CHA
|
B:BCL1601
|
3.5
|
40.2
|
1.0
|
CHD
|
B:BCL1601
|
3.6
|
38.4
|
1.0
|
CMB
|
C:BCL1502
|
3.9
|
40.4
|
1.0
|
CBB
|
C:BCL1502
|
4.0
|
35.7
|
1.0
|
ND1
|
B:HIS30
|
4.1
|
47.3
|
1.0
|
C3B
|
B:BCL1601
|
4.2
|
40.4
|
1.0
|
C2B
|
B:BCL1601
|
4.2
|
38.1
|
1.0
|
C3D
|
B:BCL1601
|
4.3
|
36.9
|
1.0
|
CG
|
B:HIS30
|
4.3
|
47.3
|
1.0
|
C2C
|
B:BCL1601
|
4.4
|
39.8
|
1.0
|
C3C
|
B:BCL1601
|
4.5
|
40.2
|
1.0
|
C2D
|
B:BCL1601
|
4.5
|
37.7
|
1.0
|
C3A
|
B:BCL1601
|
4.5
|
33.7
|
1.0
|
C2A
|
B:BCL1601
|
4.5
|
37.4
|
1.0
|
CMD
|
A:BCL1501
|
4.8
|
45.2
|
1.0
|
C2B
|
C:BCL1502
|
4.8
|
36.4
|
1.0
|
CAB
|
C:BCL1502
|
4.9
|
37.4
|
1.0
|
C16
|
A:BCL1701
|
5.0
|
70.6
|
1.0
|
CBD
|
B:BCL1601
|
5.0
|
38.6
|
1.0
|
|
Magnesium binding site 4 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 4 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1502
b:42.1
occ:1.00
|
MG
|
C:BCL1502
|
0.0
|
42.1
|
1.0
|
NB
|
C:BCL1502
|
2.0
|
37.9
|
1.0
|
ND
|
C:BCL1502
|
2.0
|
36.8
|
1.0
|
NA
|
C:BCL1502
|
2.1
|
40.5
|
1.0
|
NC
|
C:BCL1502
|
2.1
|
37.2
|
1.0
|
NE2
|
C:HIS31
|
2.2
|
41.1
|
1.0
|
C4D
|
C:BCL1502
|
2.9
|
35.3
|
1.0
|
C4B
|
C:BCL1502
|
3.0
|
35.9
|
1.0
|
C1B
|
C:BCL1502
|
3.0
|
36.4
|
1.0
|
C1C
|
C:BCL1502
|
3.1
|
35.4
|
1.0
|
C4A
|
C:BCL1502
|
3.1
|
38.5
|
1.0
|
C1A
|
C:BCL1502
|
3.2
|
37.4
|
1.0
|
CD2
|
C:HIS31
|
3.2
|
40.8
|
1.0
|
C1D
|
C:BCL1502
|
3.2
|
37.2
|
1.0
|
C4C
|
C:BCL1502
|
3.2
|
39.2
|
1.0
|
CE1
|
C:HIS31
|
3.3
|
41.3
|
1.0
|
CHC
|
C:BCL1502
|
3.4
|
37.6
|
1.0
|
CHA
|
C:BCL1502
|
3.5
|
39.4
|
1.0
|
CHB
|
C:BCL1502
|
3.5
|
39.1
|
1.0
|
CHD
|
C:BCL1502
|
3.6
|
36.6
|
1.0
|
C9
|
D:LDA1802
|
4.1
|
53.3
|
1.0
|
CMD
|
D:BCL1602
|
4.2
|
36.5
|
1.0
|
C3D
|
C:BCL1502
|
4.3
|
33.7
|
1.0
|
C3B
|
C:BCL1502
|
4.3
|
34.9
|
1.0
|
C8
|
D:LDA1802
|
4.3
|
55.0
|
1.0
|
C2B
|
C:BCL1502
|
4.3
|
36.4
|
1.0
|
CG
|
C:HIS31
|
4.4
|
39.1
|
1.0
|
ND1
|
C:HIS31
|
4.4
|
43.7
|
1.0
|
C3A
|
C:BCL1502
|
4.4
|
40.8
|
1.0
|
C2D
|
C:BCL1502
|
4.4
|
33.4
|
1.0
|
C2C
|
C:BCL1502
|
4.5
|
37.9
|
1.0
|
C2A
|
C:BCL1502
|
4.5
|
37.6
|
1.0
|
C3C
|
C:BCL1502
|
4.5
|
38.8
|
1.0
|
C7
|
D:LDA1802
|
4.7
|
53.1
|
1.0
|
CBD
|
C:BCL1502
|
4.9
|
36.3
|
1.0
|
|
Magnesium binding site 5 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 5 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1702
b:43.1
occ:1.00
|
MG
|
C:BCL1702
|
0.0
|
43.1
|
1.0
|
NB
|
C:BCL1702
|
2.0
|
44.6
|
1.0
|
ND
|
C:BCL1702
|
2.1
|
45.1
|
1.0
|
NA
|
C:BCL1702
|
2.1
|
44.1
|
1.0
|
NC
|
C:BCL1702
|
2.1
|
42.4
|
1.0
|
ON2
|
C:CXM1
|
2.2
|
45.9
|
1.0
|
C4D
|
C:BCL1702
|
3.0
|
44.2
|
1.0
|
C4B
|
C:BCL1702
|
3.0
|
43.4
|
1.0
|
C1B
|
C:BCL1702
|
3.1
|
43.8
|
1.0
|
C1C
|
C:BCL1702
|
3.1
|
42.2
|
1.0
|
C4A
|
C:BCL1702
|
3.1
|
45.7
|
1.0
|
C1D
|
C:BCL1702
|
3.2
|
43.7
|
1.0
|
C4C
|
C:BCL1702
|
3.2
|
43.1
|
1.0
|
C1A
|
C:BCL1702
|
3.2
|
43.5
|
1.0
|
O
|
C:HOH1838
|
3.2
|
0.0
|
1.0
|
CN
|
C:CXM1
|
3.3
|
48.8
|
1.0
|
CHC
|
C:BCL1702
|
3.5
|
44.1
|
1.0
|
CHA
|
C:BCL1702
|
3.5
|
42.5
|
1.0
|
CHB
|
C:BCL1702
|
3.6
|
45.0
|
1.0
|
CHD
|
C:BCL1702
|
3.6
|
42.4
|
1.0
|
N
|
C:CXM1
|
3.7
|
47.4
|
1.0
|
C15
|
D:BCL1602
|
3.9
|
62.4
|
1.0
|
O
|
C:HOH1822
|
4.0
|
41.0
|
1.0
|
C3D
|
C:BCL1702
|
4.3
|
42.4
|
1.0
|
C3B
|
C:BCL1702
|
4.3
|
45.9
|
1.0
|
C16
|
D:BCL1602
|
4.3
|
59.1
|
1.0
|
C2B
|
C:BCL1702
|
4.3
|
45.1
|
1.0
|
ON1
|
C:CXM1
|
4.4
|
49.3
|
1.0
|
C2C
|
C:BCL1702
|
4.4
|
48.6
|
1.0
|
C3A
|
C:BCL1702
|
4.4
|
44.2
|
1.0
|
C3C
|
C:BCL1702
|
4.5
|
46.3
|
1.0
|
C2D
|
C:BCL1702
|
4.5
|
44.3
|
1.0
|
C2A
|
C:BCL1702
|
4.5
|
42.9
|
1.0
|
CG
|
C:GLN3
|
4.7
|
43.3
|
1.0
|
C11
|
D:BCL1602
|
4.8
|
65.3
|
1.0
|
CD1
|
D:ILE16
|
4.9
|
43.0
|
1.0
|
CBD
|
C:BCL1702
|
5.0
|
44.2
|
1.0
|
|
Magnesium binding site 6 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 6 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1602
b:33.5
occ:1.00
|
MG
|
D:BCL1602
|
0.0
|
33.5
|
1.0
|
NB
|
D:BCL1602
|
2.0
|
34.4
|
1.0
|
ND
|
D:BCL1602
|
2.0
|
31.5
|
1.0
|
NC
|
D:BCL1602
|
2.1
|
37.3
|
1.0
|
NA
|
D:BCL1602
|
2.2
|
36.6
|
1.0
|
NE2
|
D:HIS30
|
2.2
|
40.6
|
1.0
|
C4D
|
D:BCL1602
|
3.0
|
34.6
|
1.0
|
C4B
|
D:BCL1602
|
3.0
|
31.7
|
1.0
|
C1B
|
D:BCL1602
|
3.0
|
36.5
|
1.0
|
C1C
|
D:BCL1602
|
3.1
|
34.0
|
1.0
|
C4A
|
D:BCL1602
|
3.2
|
31.6
|
1.0
|
C1D
|
D:BCL1602
|
3.2
|
34.8
|
1.0
|
CD2
|
D:HIS30
|
3.2
|
40.2
|
1.0
|
CE1
|
D:HIS30
|
3.2
|
41.7
|
1.0
|
C4C
|
D:BCL1602
|
3.2
|
36.0
|
1.0
|
C1A
|
D:BCL1602
|
3.2
|
34.0
|
1.0
|
CHC
|
D:BCL1602
|
3.4
|
30.1
|
1.0
|
CHB
|
D:BCL1602
|
3.5
|
35.8
|
1.0
|
CHA
|
D:BCL1602
|
3.6
|
36.4
|
1.0
|
CHD
|
D:BCL1602
|
3.6
|
38.1
|
1.0
|
CBB
|
E:BCL1503
|
4.0
|
37.4
|
1.0
|
CMB
|
E:BCL1503
|
4.1
|
29.2
|
1.0
|
C3D
|
D:BCL1602
|
4.2
|
35.1
|
1.0
|
C3B
|
D:BCL1602
|
4.3
|
32.0
|
1.0
|
C2B
|
D:BCL1602
|
4.3
|
33.8
|
1.0
|
ND1
|
D:HIS30
|
4.3
|
37.5
|
1.0
|
CG
|
D:HIS30
|
4.3
|
41.4
|
1.0
|
C2D
|
D:BCL1602
|
4.4
|
33.3
|
1.0
|
C2C
|
D:BCL1602
|
4.4
|
36.3
|
1.0
|
C3C
|
D:BCL1602
|
4.5
|
38.1
|
1.0
|
C3A
|
D:BCL1602
|
4.5
|
34.8
|
1.0
|
C2A
|
D:BCL1602
|
4.5
|
38.1
|
1.0
|
CMD
|
C:BCL1502
|
4.8
|
34.4
|
1.0
|
C16
|
C:BCL1702
|
4.8
|
67.7
|
1.0
|
C2B
|
E:BCL1503
|
4.9
|
32.8
|
1.0
|
CAB
|
E:BCL1503
|
5.0
|
36.0
|
1.0
|
CBD
|
D:BCL1602
|
5.0
|
35.7
|
1.0
|
|
Magnesium binding site 7 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 7 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1503
b:32.8
occ:1.00
|
MG
|
E:BCL1503
|
0.0
|
32.8
|
1.0
|
NB
|
E:BCL1503
|
1.9
|
34.2
|
1.0
|
ND
|
E:BCL1503
|
2.0
|
34.5
|
1.0
|
NA
|
E:BCL1503
|
2.1
|
34.8
|
1.0
|
NC
|
E:BCL1503
|
2.1
|
34.1
|
1.0
|
NE2
|
E:HIS31
|
2.3
|
36.2
|
1.0
|
C4D
|
E:BCL1503
|
2.9
|
30.1
|
1.0
|
C4B
|
E:BCL1503
|
2.9
|
28.2
|
1.0
|
C1B
|
E:BCL1503
|
3.0
|
32.9
|
1.0
|
C4A
|
E:BCL1503
|
3.1
|
35.3
|
1.0
|
C1C
|
E:BCL1503
|
3.1
|
31.9
|
1.0
|
C1A
|
E:BCL1503
|
3.1
|
33.6
|
1.0
|
C1D
|
E:BCL1503
|
3.1
|
32.2
|
1.0
|
CE1
|
E:HIS31
|
3.1
|
34.4
|
1.0
|
C4C
|
E:BCL1503
|
3.2
|
33.5
|
1.0
|
CD2
|
E:HIS31
|
3.3
|
35.9
|
1.0
|
CHC
|
E:BCL1503
|
3.4
|
29.6
|
1.0
|
CHA
|
E:BCL1503
|
3.4
|
31.5
|
1.0
|
CHB
|
E:BCL1503
|
3.5
|
36.8
|
1.0
|
CHD
|
E:BCL1503
|
3.6
|
30.8
|
1.0
|
C9
|
F:LDA1803
|
4.0
|
50.4
|
1.0
|
C3D
|
E:BCL1503
|
4.2
|
31.9
|
1.0
|
C3B
|
E:BCL1503
|
4.2
|
28.5
|
1.0
|
C2B
|
E:BCL1503
|
4.2
|
32.8
|
1.0
|
ND1
|
E:HIS31
|
4.3
|
34.8
|
1.0
|
C2D
|
E:BCL1503
|
4.4
|
33.4
|
1.0
|
C3A
|
E:BCL1503
|
4.4
|
35.0
|
1.0
|
C2A
|
E:BCL1503
|
4.4
|
36.4
|
1.0
|
CG
|
E:HIS31
|
4.4
|
36.6
|
1.0
|
C2C
|
E:BCL1503
|
4.4
|
35.6
|
1.0
|
C8
|
F:LDA1803
|
4.5
|
52.3
|
1.0
|
C3C
|
E:BCL1503
|
4.5
|
35.5
|
1.0
|
CMD
|
F:BCL1603
|
4.5
|
29.7
|
1.0
|
CBD
|
E:BCL1503
|
4.8
|
34.8
|
1.0
|
C7
|
F:LDA1803
|
4.9
|
54.0
|
1.0
|
CMB
|
D:BCL1602
|
5.0
|
32.4
|
1.0
|
|
Magnesium binding site 8 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 8 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1703
b:37.7
occ:1.00
|
MG
|
E:BCL1703
|
0.0
|
37.7
|
1.0
|
ND
|
E:BCL1703
|
2.0
|
37.0
|
1.0
|
NB
|
E:BCL1703
|
2.1
|
37.3
|
1.0
|
NA
|
E:BCL1703
|
2.1
|
36.3
|
1.0
|
NC
|
E:BCL1703
|
2.1
|
35.4
|
1.0
|
ON2
|
E:CXM1
|
2.1
|
41.4
|
1.0
|
C4D
|
E:BCL1703
|
2.9
|
35.6
|
1.0
|
C1B
|
E:BCL1703
|
3.0
|
35.1
|
1.0
|
C4B
|
E:BCL1703
|
3.1
|
33.7
|
1.0
|
C4A
|
E:BCL1703
|
3.1
|
34.3
|
1.0
|
C1C
|
E:BCL1703
|
3.1
|
35.2
|
1.0
|
C1D
|
E:BCL1703
|
3.1
|
33.6
|
1.0
|
C1A
|
E:BCL1703
|
3.2
|
37.9
|
1.0
|
CN
|
E:CXM1
|
3.2
|
46.3
|
1.0
|
C4C
|
E:BCL1703
|
3.2
|
34.9
|
1.0
|
CHC
|
E:BCL1703
|
3.5
|
36.5
|
1.0
|
CHA
|
E:BCL1703
|
3.5
|
39.1
|
1.0
|
CHB
|
E:BCL1703
|
3.5
|
36.0
|
1.0
|
CHD
|
E:BCL1703
|
3.6
|
29.2
|
1.0
|
N
|
E:CXM1
|
3.6
|
46.8
|
1.0
|
O
|
E:HOH1831
|
3.8
|
34.4
|
1.0
|
C15
|
F:BCL1603
|
4.1
|
56.7
|
1.0
|
C3D
|
E:BCL1703
|
4.2
|
32.4
|
1.0
|
ON1
|
E:CXM1
|
4.3
|
46.8
|
1.0
|
C3B
|
E:BCL1703
|
4.3
|
34.6
|
1.0
|
C2B
|
E:BCL1703
|
4.3
|
34.8
|
1.0
|
C2D
|
E:BCL1703
|
4.4
|
36.6
|
1.0
|
C12
|
F:BCL1603
|
4.4
|
61.5
|
1.0
|
C3A
|
E:BCL1703
|
4.4
|
37.8
|
1.0
|
C2A
|
E:BCL1703
|
4.5
|
39.1
|
1.0
|
C2C
|
E:BCL1703
|
4.5
|
34.7
|
1.0
|
C3C
|
E:BCL1703
|
4.5
|
34.3
|
1.0
|
CG
|
E:GLN3
|
4.8
|
40.8
|
1.0
|
CD1
|
F:ILE16
|
4.8
|
42.6
|
1.0
|
C13
|
F:BCL1603
|
4.9
|
57.3
|
1.0
|
C11
|
F:BCL1603
|
4.9
|
64.5
|
1.0
|
C16
|
F:BCL1603
|
4.9
|
56.5
|
1.0
|
CBD
|
E:BCL1703
|
5.0
|
37.6
|
1.0
|
|
Magnesium binding site 9 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 9 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1603
b:33.9
occ:1.00
|
MG
|
F:BCL1603
|
0.0
|
33.9
|
1.0
|
NB
|
F:BCL1603
|
2.0
|
36.6
|
1.0
|
ND
|
F:BCL1603
|
2.0
|
32.5
|
1.0
|
NC
|
F:BCL1603
|
2.1
|
31.6
|
1.0
|
NA
|
F:BCL1603
|
2.1
|
34.0
|
1.0
|
NE2
|
F:HIS30
|
2.3
|
36.0
|
1.0
|
C4D
|
F:BCL1603
|
2.9
|
27.9
|
1.0
|
C4B
|
F:BCL1603
|
3.0
|
33.6
|
1.0
|
C1B
|
F:BCL1603
|
3.0
|
33.8
|
1.0
|
C1C
|
F:BCL1603
|
3.0
|
33.0
|
1.0
|
C1D
|
F:BCL1603
|
3.1
|
30.7
|
1.0
|
C4A
|
F:BCL1603
|
3.1
|
35.9
|
1.0
|
C4C
|
F:BCL1603
|
3.1
|
26.7
|
1.0
|
C1A
|
F:BCL1603
|
3.2
|
31.7
|
1.0
|
CE1
|
F:HIS30
|
3.3
|
41.9
|
1.0
|
CD2
|
F:HIS30
|
3.4
|
38.5
|
1.0
|
CHC
|
F:BCL1603
|
3.4
|
31.9
|
1.0
|
CHA
|
F:BCL1603
|
3.5
|
32.3
|
1.0
|
CHB
|
F:BCL1603
|
3.5
|
33.4
|
1.0
|
CHD
|
F:BCL1603
|
3.6
|
30.9
|
1.0
|
CBB
|
G:BCL1504
|
3.8
|
27.1
|
1.0
|
CMB
|
G:BCL1504
|
4.1
|
32.1
|
1.0
|
C3D
|
F:BCL1603
|
4.2
|
29.4
|
1.0
|
C3B
|
F:BCL1603
|
4.3
|
32.4
|
1.0
|
C2B
|
F:BCL1603
|
4.3
|
35.9
|
1.0
|
C2C
|
F:BCL1603
|
4.4
|
32.2
|
1.0
|
C2D
|
F:BCL1603
|
4.4
|
29.5
|
1.0
|
ND1
|
F:HIS30
|
4.4
|
43.2
|
1.0
|
C3C
|
F:BCL1603
|
4.4
|
32.2
|
1.0
|
C3A
|
F:BCL1603
|
4.5
|
30.2
|
1.0
|
C2A
|
F:BCL1603
|
4.5
|
36.3
|
1.0
|
CG
|
F:HIS30
|
4.5
|
42.3
|
1.0
|
CMD
|
E:BCL1503
|
4.7
|
32.6
|
1.0
|
CAB
|
G:BCL1504
|
4.8
|
30.6
|
1.0
|
CBD
|
F:BCL1603
|
4.9
|
34.3
|
1.0
|
C2B
|
G:BCL1504
|
4.9
|
27.4
|
1.0
|
|
Magnesium binding site 10 out
of 27 in 2fkw
Go back to
Magnesium Binding Sites List in 2fkw
Magnesium binding site 10 out
of 27 in the Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of LH2 From Rps. Acidophila Crystallized in Lipidic Mesophases within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1504
b:30.4
occ:1.00
|
MG
|
G:BCL1504
|
0.0
|
30.4
|
1.0
|
O
|
G:HOH1838
|
1.6
|
0.4
|
1.0
|
NB
|
G:BCL1504
|
2.0
|
34.2
|
1.0
|
ND
|
G:BCL1504
|
2.0
|
30.3
|
1.0
|
NC
|
G:BCL1504
|
2.1
|
32.0
|
1.0
|
NA
|
G:BCL1504
|
2.2
|
32.3
|
1.0
|
NE2
|
G:HIS31
|
2.3
|
35.1
|
1.0
|
C4D
|
G:BCL1504
|
2.9
|
28.8
|
1.0
|
C1B
|
G:BCL1504
|
3.0
|
29.2
|
1.0
|
C4B
|
G:BCL1504
|
3.0
|
29.6
|
1.0
|
C1C
|
G:BCL1504
|
3.1
|
34.1
|
1.0
|
C1D
|
G:BCL1504
|
3.1
|
33.9
|
1.0
|
C4A
|
G:BCL1504
|
3.1
|
27.8
|
1.0
|
C4C
|
G:BCL1504
|
3.1
|
32.3
|
1.0
|
C1A
|
G:BCL1504
|
3.2
|
28.9
|
1.0
|
CE1
|
G:HIS31
|
3.3
|
32.9
|
1.0
|
CD2
|
G:HIS31
|
3.4
|
31.7
|
1.0
|
CHC
|
G:BCL1504
|
3.5
|
33.7
|
1.0
|
CHB
|
G:BCL1504
|
3.5
|
32.9
|
1.0
|
CHA
|
G:BCL1504
|
3.5
|
30.8
|
1.0
|
CHD
|
G:BCL1504
|
3.6
|
31.4
|
1.0
|
C2B
|
G:BCL1504
|
4.2
|
27.4
|
1.0
|
C3D
|
G:BCL1504
|
4.3
|
29.3
|
1.0
|
C3B
|
G:BCL1504
|
4.3
|
26.3
|
1.0
|
ND1
|
G:HIS31
|
4.4
|
36.9
|
1.0
|
C2D
|
G:BCL1504
|
4.4
|
28.8
|
1.0
|
C3A
|
G:BCL1504
|
4.4
|
32.9
|
1.0
|
C2C
|
G:BCL1504
|
4.4
|
37.8
|
1.0
|
C3C
|
G:BCL1504
|
4.5
|
36.2
|
1.0
|
CG
|
G:HIS31
|
4.5
|
34.2
|
1.0
|
C2A
|
G:BCL1504
|
4.5
|
32.9
|
1.0
|
CMD
|
H:BCL1604
|
4.7
|
37.3
|
1.0
|
CMB
|
F:BCL1603
|
4.9
|
38.0
|
1.0
|
CBD
|
G:BCL1504
|
5.0
|
32.1
|
1.0
|
|
Reference:
V.Cherezov,
J.Clogston,
M.Z.Papiz,
M.Caffrey.
Room to Move: Crystallizing Membrane Proteins in Swollen Lipidic Mesophases J.Mol.Biol. V. 357 1605 2006.
ISSN: ISSN 0022-2836
PubMed: 16490208
DOI: 10.1016/J.JMB.2006.01.049
Page generated: Tue Aug 13 23:08:37 2024
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