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Magnesium in PDB 2fmk: Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0)

Protein crystallography data

The structure of Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0), PDB code: 2fmk was solved by J.Guhaniyogi, V.L.Robinson, A.M.Stock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.189, 61.953, 36.617, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 23.2

Other elements in 2fmk:

The structure of Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0) also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0) (pdb code 2fmk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0), PDB code: 2fmk:

Magnesium binding site 1 out of 1 in 2fmk

Go back to Magnesium Binding Sites List in 2fmk
Magnesium binding site 1 out of 1 in the Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of MG2+ and BEF3- Bound Chey in Complex with Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown in Mes (pH 6.0) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg9001

b:7.4
occ:1.00
F1 A:BEF501 1.9 6.0 1.0
OD2 A:ASP57 2.0 4.0 1.0
O A:HOH9035 2.1 9.4 1.0
O A:ASN59 2.1 4.7 1.0
OD1 A:ASP13 2.2 5.3 1.0
O A:HOH9003 2.2 3.2 1.0
CG A:ASP57 3.0 2.3 1.0
BE A:BEF501 3.1 5.2 1.0
CG A:ASP13 3.2 5.4 1.0
C A:ASN59 3.3 4.5 1.0
OD1 A:ASP57 3.4 3.0 1.0
OD2 A:ASP13 3.6 6.4 1.0
CA A:ASN59 4.0 4.6 1.0
F3 A:BEF501 4.0 3.7 1.0
OD1 A:ASP12 4.0 4.8 1.0
CB A:ASN59 4.0 5.1 1.0
F2 A:BEF501 4.1 5.2 1.0
CG A:MET60 4.2 3.4 1.0
N A:ASN59 4.3 4.2 1.0
N A:MET60 4.3 4.5 1.0
CB A:ASP57 4.4 2.7 1.0
O A:HOH9037 4.4 20.1 1.0
O A:HOH9009 4.5 8.3 1.0
N A:ASP13 4.5 4.3 1.0
CB A:ASP13 4.5 5.1 1.0
CA A:MET60 4.6 4.5 1.0
O A:HOH9036 4.6 19.2 1.0
CG A:ASP12 4.7 4.0 1.0
NZ A:LYS109 4.8 2.0 1.0
OD2 A:ASP12 4.9 4.8 1.0
CB A:MET60 5.0 4.8 1.0

Reference:

J.Guhaniyogi, V.L.Robinson, A.M.Stock. Crystal Structures of Beryllium Fluoride-Free and Beryllium Fluoride-Bound Chey in Complex with the Conserved C-Terminal Peptide of Chez Reveal Dual Binding Modes Specific to Chey Conformation J.Mol.Biol. V. 359 624 2006.
ISSN: ISSN 0022-2836
PubMed: 16674976
DOI: 10.1016/J.JMB.2006.03.050
Page generated: Mon Dec 14 07:23:14 2020

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