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Magnesium in PDB 2fsn: Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp

Protein crystallography data

The structure of Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp, PDB code: 2fsn was solved by A.Roeben, C.Kofler, I.Nagy, S.Nickell, F.Ulrich Hartl, A.Bracher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.703, 92.840, 73.659, 90.00, 89.94, 90.00
R / Rfree (%) 28.3 / 35.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp (pdb code 2fsn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp, PDB code: 2fsn:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2fsn

Go back to Magnesium Binding Sites List in 2fsn
Magnesium binding site 1 out of 2 in the Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg327

b:51.4
occ:1.00
O1B A:ADP328 1.9 49.8 1.0
O A:HOH329 2.3 44.9 1.0
PB A:ADP328 3.3 46.9 1.0
O1A A:ADP328 3.4 47.3 1.0
OD2 A:ASP72 3.5 28.8 1.0
O2B A:ADP328 3.8 48.5 1.0
OD1 A:ASP72 3.8 33.5 1.0
O3B A:ADP328 4.1 49.1 1.0
OD2 A:ASP176 4.1 19.2 1.0
CG A:ASP72 4.2 30.7 1.0
O3A A:ADP328 4.5 46.0 1.0
NZ A:LYS14 4.5 25.7 1.0
PA A:ADP328 4.5 47.6 1.0
OD1 A:ASP176 4.5 23.0 1.0
CA A:GLY9 4.6 24.2 1.0
OD1 A:ASP7 4.7 11.1 1.0
CA A:GLY178 4.7 21.9 1.0
CG A:ASP176 4.8 18.2 1.0
OD2 A:ASP7 5.0 7.3 1.0

Magnesium binding site 2 out of 2 in 2fsn

Go back to Magnesium Binding Sites List in 2fsn
Magnesium binding site 2 out of 2 in the Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of TA0583, An Archaeal Actin Homolog, Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg327

b:47.6
occ:1.00
O2B B:ADP328 1.9 49.8 1.0
PB B:ADP328 3.3 47.4 1.0
OD2 B:ASP72 3.5 27.2 1.0
O3B B:ADP328 3.7 54.2 1.0
OD1 B:ASP72 3.8 32.3 1.0
O1A B:ADP328 3.9 46.9 1.0
OD2 B:ASP176 3.9 22.3 1.0
O1B B:ADP328 4.0 48.3 1.0
CG B:ASP72 4.1 28.7 1.0
NZ B:LYS14 4.4 28.0 1.0
CA B:GLY9 4.5 23.8 1.0
OD1 B:ASP7 4.5 12.6 1.0
O3A B:ADP328 4.6 46.1 1.0
OD2 B:ASP7 4.7 9.4 1.0
PA B:ADP328 4.8 46.3 1.0
CG B:ASP176 4.8 18.7 1.0
OD1 B:ASP176 4.9 23.8 1.0
CA B:GLY178 5.0 21.5 1.0

Reference:

A.Roeben, C.Kofler, I.Nagy, S.Nickell, F.Ulrich Hartl, A.Bracher. Crystal Structure of An Archaeal Actin Homolog J.Mol.Biol. V. 358 145 2006.
ISSN: ISSN 0022-2836
PubMed: 16500678
DOI: 10.1016/J.JMB.2006.01.096
Page generated: Mon Dec 14 07:23:32 2020

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