Magnesium in PDB 2g5k: Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin

The structure of Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin, PDB code: 2g5k was solved by J.Kondo, B.Francois, A.Urzhumtsev, E.Westhof, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.80
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	33.123, 33.123, 116.421, 90.00, 90.00, 120.00
R / Rfree (%)	25.8 / 27

The structure of Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin also contains other interesting chemical elements:

Cobalt

(Co)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin (pdb code 2g5k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin, PDB code: 2g5k:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:91.7 occ:1.00 O A:HOH417 2.0 87.7 1.0 O A:HOH419 2.1 96.8 1.0 O A:HOH416 2.1 90.2 1.0 O B:HOH418 2.1 88.3 1.0 O A:HOH421 2.1 95.6 1.0 O A:HOH420 2.1 76.2 1.0 OA6 A:AM2102 4.3 92.4 1.0 OP2 B:A40 4.5 0.4 1.0 OP2 A:G3 4.6 71.4 1.0 OA4 A:AM2102 4.6 71.1 1.0 CA6 A:AM2102 4.8 48.4 1.0 OP1 A:G3 5.0 0.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:91.7 occ:1.00 O B:HOH423 2.0 93.7 1.0 O B:HOH425 2.1 93.9 1.0 O B:HOH422 2.1 91.8 1.0 O A:HOH424 2.1 91.2 1.0 O B:HOH427 2.1 89.2 1.0 O B:HOH426 2.1 76.8 1.0 OA6 B:AM2101 4.3 84.1 1.0 OP2 A:A17 4.5 0.4 1.0 OP2 B:G26 4.6 72.2 1.0 OA4 B:AM2101 4.6 67.6 1.0 CA6 B:AM2101 4.8 48.1 1.0 OP1 B:G26 5.0 0.1 1.0

J.Kondo, B.Francois, A.Urzhumtsev, E.Westhof. Crystal Structure of the Homo Sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin Angew.Chem.Int.Ed.Engl. V. 45 3310 2006.
ISSN: ISSN 1433-7851
PubMed: 16596680
DOI: 10.1002/ANIE.200600354