Magnesium in PDB 2g80: Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution

The structure of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution, PDB code: 2g80 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.53 / 2.28
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.688, 102.016, 77.227, 90.00, 92.68, 90.00
R / Rfree (%)	17.7 / 22.9

The binding sites of Magnesium atom in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution (pdb code 2g80). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution, PDB code: 2g80:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:32.4 occ:1.00 O A:HOH509 2.0 32.3 1.0 O A:HOH517 2.0 29.9 1.0 O A:HOH593 2.1 38.9 1.0 OD1 A:ASP200 2.1 41.7 1.0 O A:GLU27 2.1 36.4 1.0 OD2 A:ASP25 2.2 39.5 1.0 CG A:ASP200 3.0 40.9 1.0 CG A:ASP25 3.1 41.5 1.0 OD2 A:ASP200 3.3 41.9 1.0 C A:GLU27 3.3 35.0 1.0 OD1 A:ASP25 3.5 38.1 1.0 CA A:GLU27 4.0 38.7 1.0 O A:HOH571 4.1 49.3 1.0 N A:GLU27 4.1 37.2 1.0 CB A:GLU27 4.2 40.5 1.0 OG1 A:THR29 4.2 34.3 1.0 N A:GLY28 4.3 35.4 1.0 CB A:ASP200 4.4 37.0 1.0 CB A:ASP25 4.5 34.4 1.0 N A:ASP200 4.5 32.6 1.0 CA A:GLY28 4.6 32.5 1.0 OG A:SER199 4.7 35.2 1.0 OE1 A:GLU27 4.8 56.5 1.0 C A:GLY28 4.9 34.0 1.0 O A:HOH521 4.9 47.0 1.0 N A:ASN201 4.9 38.1 1.0 C A:ILE26 4.9 35.6 1.0 CA A:ASP200 4.9 36.8 1.0 N A:THR29 4.9 36.1 1.0 OE2 A:GLU204 4.9 51.4 1.0 OE1 A:GLU204 5.0 48.5 1.0

Magnesium binding site 2 out of 6 in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg500 b:35.7 occ:1.00 O B:HOH515 2.0 34.4 1.0 O B:HOH548 2.1 42.1 1.0 O B:HOH559 2.1 38.2 1.0 OD2 B:ASP25 2.1 37.8 1.0 O B:GLU27 2.2 34.6 1.0 OD1 B:ASP200 2.2 40.1 1.0 CG B:ASP25 3.1 39.6 1.0 CG B:ASP200 3.2 37.9 1.0 OD1 B:ASP25 3.3 34.0 1.0 C B:GLU27 3.4 36.0 1.0 OD2 B:ASP200 3.5 40.7 1.0 OG1 B:THR29 4.1 33.1 1.0 CA B:GLU27 4.2 38.4 1.0 N B:GLU27 4.3 36.2 1.0 N B:GLY28 4.4 35.6 1.0 CB B:ASP25 4.4 34.8 1.0 CB B:GLU27 4.4 38.5 1.0 N B:ASP200 4.5 34.4 1.0 CB B:ASP200 4.5 37.5 1.0 OG B:SER199 4.6 36.4 1.0 CA B:GLY28 4.6 35.5 1.0 O B:HOH553 4.8 40.0 1.0 C B:ILE26 4.8 34.9 1.0 C B:GLY28 4.9 35.1 1.0 CA B:ASP200 4.9 36.4 1.0 N B:ASN201 5.0 36.1 1.0 OE1 B:GLU204 5.0 53.0 1.0 N B:THR29 5.0 35.0 1.0 OE2 B:GLU204 5.0 51.7 1.0

Magnesium binding site 3 out of 6 in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg500 b:40.6 occ:1.00 O C:HOH510 2.0 28.8 1.0 O C:HOH511 2.0 35.3 1.0 O C:GLU27 2.2 40.2 1.0 OD2 C:ASP25 2.2 38.5 1.0 OD1 C:ASP200 2.2 49.7 1.0 O C:HOH548 2.2 40.5 1.0 CG C:ASP25 3.1 42.7 1.0 CG C:ASP200 3.2 42.5 1.0 OD1 C:ASP25 3.3 42.5 1.0 C C:GLU27 3.3 39.1 1.0 OD2 C:ASP200 3.5 44.6 1.0 CA C:GLU27 4.1 41.9 1.0 CB C:GLU27 4.2 42.2 1.0 N C:GLU27 4.3 40.5 1.0 OG1 C:THR29 4.3 32.7 1.0 N C:GLY28 4.3 39.5 1.0 CB C:ASP25 4.4 37.9 1.0 N C:ASP200 4.5 35.3 1.0 CB C:ASP200 4.5 40.0 1.0 OG C:SER199 4.5 34.9 1.0 CA C:GLY28 4.6 39.4 1.0 O C:HOH505 4.6 39.1 1.0 OE2 C:GLU204 4.8 49.5 1.0 OE1 C:GLU204 4.8 49.1 1.0 O C:HOH516 4.9 42.6 1.0 N C:ASN201 4.9 38.7 1.0 C C:GLY28 4.9 37.1 1.0 CA C:ASP200 4.9 38.8 1.0 C C:ILE26 5.0 38.3 1.0

Magnesium binding site 4 out of 6 in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:45.0 occ:1.00 OD2 C:ASP90 2.2 39.9 1.0 O A:HOH601 2.2 31.4 1.0 O A:HOH575 2.2 35.3 1.0 O C:HOH572 2.3 37.0 1.0 O C:HOH573 2.5 46.2 1.0 OD2 A:ASP90 3.2 54.4 1.0 CG C:ASP90 3.3 34.5 1.0 NE2 A:HIS79 3.6 34.5 1.0 O A:HOH560 3.8 39.2 1.0 OD1 C:ASP90 3.8 35.9 1.0 O A:HOH578 4.0 41.8 1.0 CG A:ASP90 4.1 48.6 1.0 CE1 A:HIS79 4.2 37.4 1.0 CD1 A:PHE68 4.4 32.3 1.0 CB C:ASP90 4.5 39.4 1.0 O A:PHE68 4.5 27.6 1.0 OD1 A:ASP90 4.6 50.3 1.0 CD2 A:HIS79 4.6 29.8 1.0 NE2 C:HIS79 4.8 34.0 1.0 CA A:PHE68 4.9 31.0 1.0

Magnesium binding site 5 out of 6 in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg500 b:42.5 occ:1.00 O D:HOH563 1.9 38.4 1.0 OD1 D:ASP200 2.1 43.1 1.0 OD2 D:ASP25 2.2 34.6 1.0 O D:GLU27 2.2 40.4 1.0 O D:HOH562 2.2 41.6 1.0 O D:HOH564 2.2 49.1 1.0 CG D:ASP25 3.0 34.5 1.0 OD1 D:ASP25 3.1 33.9 1.0 CG D:ASP200 3.2 44.3 1.0 C D:GLU27 3.3 38.7 1.0 OD2 D:ASP200 3.5 36.4 1.0 CA D:GLU27 4.0 41.1 1.0 CB D:GLU27 4.1 40.6 1.0 N D:GLU27 4.1 36.3 1.0 OG1 D:THR29 4.3 31.9 1.0 O D:HOH567 4.3 54.1 1.0 CB D:ASP25 4.4 34.7 1.0 N D:GLY28 4.4 39.2 1.0 N D:ASP200 4.5 40.0 1.0 CB D:ASP200 4.5 38.5 1.0 OG D:SER199 4.6 38.2 1.0 CA D:GLY28 4.7 36.1 1.0 C D:ILE26 4.7 37.1 1.0 N D:ASN201 4.9 41.5 1.0 CA D:ASP200 4.9 41.1 1.0

Magnesium binding site 6 out of 6 in the Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of UTR4 Protein (Unknown Transcript 4 Protein) (YEL038W) From Saccharomyces Cerevisiae at 2.28 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg501 b:72.9 occ:1.00 O D:HOH565 2.1 41.9 1.0 O D:HOH541 2.5 49.5 1.0 O D:HOH566 2.5 42.6 1.0 OD2 D:ASP90 3.0 38.6 1.0 O D:HOH557 3.4 38.8 1.0 O D:HOH536 3.5 36.9 1.0 CD1 D:PHE68 3.7 29.6 1.0 CG D:ASP90 3.9 40.7 1.0 NE2 D:HIS79 4.1 33.0 1.0 OD1 D:ASP90 4.2 47.7 1.0 CE1 D:PHE68 4.3 31.5 1.0 CA D:PHE68 4.5 29.9 1.0 O D:PHE68 4.6 31.2 1.0 CG D:PHE68 4.7 29.0 1.0 CB D:PHE68 4.9 30.4 1.0 CE1 D:HIS79 4.9 37.0 1.0 O D:GLN67 4.9 34.2 1.0 CD2 D:HIS79 5.0 38.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.