Magnesium in PDB 2gbz: The Crystal Structure of XC847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly-Shifted Helix

The structure of The Crystal Structure of XC847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly-Shifted Helix, PDB code: 2gbz was solved by K.H.Chin, C.Y.Yang, C.C.Chou, A.H.J.Wang, S.H.Chou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.88 / 2.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.540, 67.540, 89.820, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 26.3

The binding sites of Magnesium atom in the The Crystal Structure of XC847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly-Shifted Helix (pdb code 2gbz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of XC847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly-Shifted Helix, PDB code: 2gbz:

Magnesium binding site 1 out of 1 in the The Crystal Structure of XC847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly-Shifted Helix


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of XC847 From Xanthomonas Campestris: A 3-5 Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly-Shifted Helix within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg5082 b:33.3 occ:1.00 O A:HOH5084 1.9 27.6 1.0 O A:HOH5085 1.9 27.1 1.0 OD1 A:ASP15 2.0 32.5 1.0 O A:HOH5086 2.0 34.7 1.0 O A:HOH5083 2.1 37.3 1.0 CG A:ASP15 3.1 32.8 1.0 OD2 A:ASP15 3.5 36.5 1.0 O A:HOH261 3.7 40.0 1.0 OD1 A:ASP115 3.9 36.6 1.0 O A:LEU16 4.0 31.7 1.0 O A:ASN110 4.0 35.6 1.0 O A:HOH244 4.1 30.0 1.0 OD2 A:ASP115 4.2 35.1 1.0 CB A:ASP15 4.3 30.5 1.0 N A:LEU16 4.5 27.6 1.0 CG A:ASP115 4.5 33.0 1.0 CA A:ASP15 4.7 29.1 1.0 O A:HOH280 5.0 41.6 1.0

K.H.Chin, C.Y.Yang, C.C.Chou, A.H.J.Wang, S.H.Chou. The Crystal Structure of XC847 From Xanthomonas Campestris: A 3'-5' Oligoribonuclease of Dnaq Fold Family with A Novel Opposingly Shifted Helix Proteins V. 65 1036 2006.
ISSN: ISSN 0887-3585
PubMed: 17029243
DOI: 10.1002/PROT.21148