Magnesium in PDB 2gfq: Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii

The structure of Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii, PDB code: 2gfq was solved by M.E.Cuff, T.Skarina, E.Gorodichtchenskaia, A.Edwards, A.Savchenko, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.80 / 1.75
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	65.021, 67.029, 111.572, 90.00, 90.09, 90.00
R / Rfree (%)	15 / 17.9

The binding sites of Magnesium atom in the Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii (pdb code 2gfq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii, PDB code: 2gfq:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2018 b:30.9 occ:1.00 OE2 A:GLU154 1.9 23.4 1.0 NE2 A:HIS92 2.1 14.7 1.0 NE2 A:HIS141 2.1 12.2 0.7 O A:HOH2120 2.6 24.5 1.0 O A:HOH2410 2.6 45.3 1.0 CD A:GLU154 2.8 21.2 1.0 CE1 A:HIS92 2.9 12.1 1.0 OE1 A:GLU154 3.0 21.4 1.0 CE1 A:HIS141 3.1 9.7 0.7 CD2 A:HIS141 3.1 13.7 0.7 CD2 A:HIS92 3.2 12.7 1.0 CD1 A:PHE152 3.8 11.7 1.0 NE2 A:HIS140 3.9 15.0 1.0 CE1 A:HIS140 4.0 15.1 1.0 ND1 A:HIS92 4.1 12.3 1.0 CG A:GLU154 4.1 16.4 1.0 CG A:PHE152 4.2 10.0 1.0 ND1 A:HIS141 4.2 9.3 0.7 CG A:HIS141 4.2 11.6 0.7 CG A:HIS92 4.3 12.2 1.0 CB A:PHE152 4.3 9.2 1.0 CE1 A:PHE152 4.5 12.6 1.0 O A:ARG79 4.7 12.5 1.0 OE1 A:GLU137 4.8 17.4 1.0 OE2 A:GLU137 4.8 23.7 1.0 CD2 A:HIS140 4.8 13.7 1.0 OG A:SER78 4.9 11.9 1.0 ND1 A:HIS141 4.9 15.5 0.3 O A:HOH2123 4.9 28.7 1.0 ND1 A:HIS140 5.0 14.6 1.0

Magnesium binding site 2 out of 3 in the Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2020 b:40.5 occ:1.00 OE2 B:GLU154 2.0 21.6 1.0 NE2 B:HIS92 2.1 16.2 1.0 NE2 B:HIS141 2.2 9.4 0.5 O B:HOH2293 2.6 44.4 1.0 O B:HOH2050 2.6 20.9 1.0 CD B:GLU154 2.8 19.7 1.0 CE1 B:HIS92 2.9 15.9 1.0 OE1 B:GLU154 3.0 22.6 1.0 CD2 B:HIS141 3.1 8.9 0.5 CE1 B:HIS141 3.2 8.9 0.5 CD2 B:HIS92 3.2 13.6 1.0 NE2 B:HIS140 3.6 14.6 1.0 CE1 B:HIS140 3.8 14.1 1.0 CD1 B:PHE152 4.1 12.5 1.0 ND1 B:HIS92 4.1 15.4 1.0 CG B:GLU154 4.2 16.4 1.0 CG B:HIS141 4.3 10.1 0.5 ND1 B:HIS141 4.3 8.6 0.5 CG B:HIS92 4.3 13.1 1.0 CG B:PHE152 4.4 13.0 1.0 CB B:PHE152 4.5 11.4 1.0 CD2 B:HIS140 4.5 14.8 1.0 OE1 B:GLU137 4.6 17.3 1.0 OE2 B:GLU137 4.6 22.9 1.0 ND1 B:HIS141 4.6 16.7 0.5 O B:ARG79 4.7 14.1 1.0 CE1 B:PHE152 4.7 11.9 1.0 ND1 B:HIS140 4.8 15.0 1.0 OG B:SER78 4.8 12.3 1.0 CD B:GLU137 4.9 17.9 1.0 O B:HOH2079 4.9 23.4 1.0

Magnesium binding site 3 out of 3 in the Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Protein of Unknown Function PH0006 From Pyrococcus Horikoshii within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg2019 b:32.9 occ:1.00 OE1 C:GLU154 1.9 21.5 1.0 NE2 C:HIS92 2.1 17.1 1.0 NE2 C:HIS141 2.1 21.9 1.0 O C:HOH2198 2.3 42.5 1.0 O C:HOH2051 2.7 30.1 1.0 CD C:GLU154 2.8 19.9 1.0 CE1 C:HIS92 2.8 19.1 1.0 OE2 C:GLU154 3.1 22.5 1.0 CD2 C:HIS141 3.1 22.6 1.0 CE1 C:HIS141 3.1 21.0 1.0 CD2 C:HIS92 3.2 17.2 1.0 NE2 C:HIS140 3.7 18.6 1.0 CD2 C:PHE152 3.8 16.7 1.0 CE1 C:HIS140 3.9 19.1 1.0 ND1 C:HIS92 4.0 16.6 1.0 CG C:GLU154 4.2 18.3 1.0 CG C:PHE152 4.2 15.7 1.0 ND1 C:HIS141 4.2 20.4 1.0 CG C:HIS141 4.2 19.4 1.0 CG C:HIS92 4.2 16.0 1.0 CB C:PHE152 4.3 13.7 1.0 CE2 C:PHE152 4.4 16.3 1.0 CD2 C:HIS140 4.6 17.6 1.0 OE2 C:GLU137 4.7 28.5 1.0 OG C:SER78 4.8 16.2 1.0 O C:ARG79 4.8 16.6 1.0 O C:HOH2222 4.8 46.4 1.0 OE1 C:GLU137 4.8 25.5 1.0 ND1 C:HIS140 4.9 18.2 1.0

M.E.Cuff, T.Skarina, E.Gorodichtchenskaia, A.Edwards, A.Savchenko, A.Joachimiak. Structure of Hypothetical Protein PH0006 From Pyrococcus Horikoshii To Be Published.