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Magnesium in PDB 2gpy: Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans

Protein crystallography data

The structure of Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans, PDB code: 2gpy was solved by U.A.Ramagopal, Y.V.Patskovsky, S.C.Almo, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.44 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.567, 62.807, 137.746, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 24.8

Other elements in 2gpy:

The structure of Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans (pdb code 2gpy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans, PDB code: 2gpy:

Magnesium binding site 1 out of 1 in 2gpy

Go back to Magnesium Binding Sites List in 2gpy
Magnesium binding site 1 out of 1 in the Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:35.8
occ:1.00
O B:HOH416 2.1 46.9 1.0
OD1 B:ASN160 2.1 40.2 1.0
O B:HOH373 2.1 44.1 1.0
OD2 B:ASP206 2.1 36.1 1.0
O B:HOH371 2.1 42.2 1.0
O B:HOH319 2.2 33.2 1.0
CG B:ASN160 3.1 39.6 1.0
CG B:ASP206 3.2 38.0 1.0
ND2 B:ASN160 3.5 40.2 1.0
CB B:ASP206 3.6 38.9 1.0
OD2 B:ASP159 4.3 46.0 1.0
OD1 B:ASP39 4.3 44.3 1.0
OD1 B:ASP206 4.3 38.7 1.0
CB B:ASN160 4.4 38.1 1.0
O B:HOH390 4.4 51.7 1.0
N B:ASP39 4.5 44.0 1.0
O B:ILE37 4.6 45.6 1.0
OD1 B:ASP159 4.6 44.7 1.0
CG B:ASP159 4.8 42.2 1.0
ZN B:ZN302 4.8 41.0 0.8
CB B:ASP39 4.9 43.0 1.0
CA B:ASN160 5.0 38.7 1.0
CG B:ASP39 5.0 42.8 1.0

Reference:

U.A.Ramagopal, Y.V.Patskovsky, S.C.Almo. Crystal Structure of Putative O-Methyltransferase From Bacillus Halodurans To Be Published.
Page generated: Mon Dec 14 07:24:48 2020

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