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Magnesium in PDB 2gry: Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp

Protein crystallography data

The structure of Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp, PDB code: 2gry was solved by J.Wang, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.29 / 2.35
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 121.475, 121.475, 175.684, 90.00, 90.00, 120.00
R / Rfree (%) 22.2 / 28.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp (pdb code 2gry). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp, PDB code: 2gry:

Magnesium binding site 1 out of 1 in 2gry

Go back to Magnesium Binding Sites List in 2gry
Magnesium binding site 1 out of 1 in the Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:42.0
occ:1.00
O A:HOH1025 2.0 31.5 1.0
O A:HOH1024 2.1 38.0 1.0
O A:HOH1016 2.2 39.1 1.0
O3B A:ADP601 2.2 71.0 1.0
OG1 A:THR293 2.3 60.9 1.0
O A:HOH1001 2.3 38.3 1.0
PB A:ADP601 3.3 64.1 1.0
O1B A:ADP601 3.3 67.0 1.0
CB A:THR293 3.4 60.8 1.0
OD2 A:ASP430 4.0 59.7 1.0
O A:HOH1022 4.2 42.4 1.0
N A:THR293 4.2 56.4 1.0
O A:SER405 4.2 73.0 1.0
O3A A:ADP601 4.3 61.7 1.0
O2A A:ADP601 4.3 61.4 1.0
CG2 A:THR293 4.4 65.1 1.0
CA A:THR293 4.4 58.8 1.0
O2B A:ADP601 4.4 58.4 1.0
OD1 A:ASP430 4.4 57.5 1.0
NH1 A:ARG394 4.5 53.6 1.0
PA A:ADP601 4.6 55.1 1.0
CG A:ASP430 4.6 55.3 1.0
CE A:LYS292 4.7 59.8 1.0
C A:SER405 4.9 73.5 1.0
O1A A:ADP601 5.0 57.4 1.0

Reference:

J.Wang, Y.Shen, W.Tempel, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park. Crystal Structure of the Human KIF2 Motor Domain in Complex with Adp To Be Published.
Page generated: Tue Aug 13 23:34:53 2024

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