Magnesium in PDB 2gsh: Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium

All present enzymatic activity of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium:
4.2.1.90;

The structure of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium, PDB code: 2gsh was solved by Y.Patskovsky, V.N.Malashkevich, J.M.Sauder, M.Dickey, J.M.Adams, S.R.Wasserman, J.Gerlt, S.C.Almo, S.K.Burley, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.39
Space group	P 2 3
Cell size a, b, c (Å), α, β, γ (°)	135.145, 135.145, 135.145, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 24.1

The binding sites of Magnesium atom in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium (pdb code 2gsh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium, PDB code: 2gsh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg414 b:47.6 occ:1.00 OD2 A:ASP226 2.2 63.8 1.0 O A:HOH418 2.3 43.0 1.0 OE2 A:GLU252 2.3 38.7 1.0 OE1 A:GLU280 2.4 50.5 1.0 O A:HOH480 2.6 44.7 1.0 CG A:ASP226 3.1 57.2 1.0 CD A:GLU280 3.3 53.0 1.0 CD A:GLU252 3.3 34.5 1.0 OD1 A:ASP226 3.4 55.8 1.0 OE2 A:GLU280 3.4 46.4 1.0 CG A:GLU252 4.0 29.3 1.0 O A:HOH433 4.2 31.8 1.0 O A:HOH479 4.2 62.7 1.0 OE1 A:GLU252 4.2 32.9 1.0 CD2 A:HIS329 4.3 51.2 1.0 CE A:LYS189 4.4 39.4 1.0 CB A:ASP226 4.4 49.8 1.0 NZ A:LYS189 4.4 39.9 1.0 OE1 A:GLU253 4.7 60.0 1.0 CG A:GLU280 4.7 50.5 1.0 OE2 A:GLU349 4.9 34.5 1.0 NE2 A:HIS329 4.9 50.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg414 b:52.3 occ:1.00 OD2 B:ASP226 2.2 63.8 1.0 O B:HOH419 2.3 45.8 1.0 OE1 B:GLU280 2.4 50.5 1.0 OE2 B:GLU252 2.4 38.5 1.0 O B:HOH481 2.6 43.3 1.0 CG B:ASP226 3.1 57.3 1.0 CD B:GLU280 3.2 52.9 1.0 OE2 B:GLU280 3.4 46.4 1.0 CD B:GLU252 3.4 34.4 1.0 OD1 B:ASP226 3.4 55.9 1.0 CG B:GLU252 4.0 29.4 1.0 O B:HOH480 4.2 65.3 1.0 O B:HOH426 4.2 33.4 1.0 CD2 B:HIS329 4.2 51.2 1.0 OE1 B:GLU252 4.3 33.0 1.0 CE B:LYS189 4.4 39.4 1.0 NZ B:LYS189 4.5 39.9 1.0 CB B:ASP226 4.5 49.8 1.0 CG B:GLU280 4.6 50.5 1.0 OE1 B:GLU253 4.6 60.0 1.0 NE2 B:HIS329 4.8 50.5 1.0 OE2 B:GLU349 4.9 34.4 1.0

Y.Patskovsky, V.N.Malashkevich, J.M.Sauder, M.Dickey, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.C.Almo. Crystal Structure of L-Rhamnonate Dehydratase From Salmonella Typhimurium LT2 To Be Published.