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Magnesium in PDB 2guh: Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1

Protein crystallography data

The structure of Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1, PDB code: 2guh was solved by Y.Kim, A.Joachimiak, T.Skarina, H.Zheng, A.Edwards, A.Savchenko, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.37 / 1.52
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.259, 72.130, 133.875, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 18.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1 (pdb code 2guh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1, PDB code: 2guh:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 2guh

Go back to Magnesium Binding Sites List in 2guh
Magnesium binding site 1 out of 3 in the Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:19.7
occ:0.70
O A:HOH708 1.8 16.1 1.0
O A:HOH729 2.0 19.8 1.0
O A:LEU138 2.1 12.9 1.0
O A:HOH720 2.1 27.9 1.0
O A:HOH723 2.2 29.8 1.0
O A:HOH715 2.2 16.9 1.0
C A:LEU138 3.3 12.7 1.0
O A:HOH582 3.7 23.6 1.0
O A:GLU136 3.9 12.6 1.0
O A:HOH592 3.9 25.5 1.0
N A:LEU138 4.0 12.2 1.0
N A:PRO139 4.1 13.1 1.0
CA A:LEU138 4.2 12.3 1.0
CA A:PRO139 4.2 13.6 1.0
O A:ALA135 4.3 11.0 1.0
C A:ARG137 4.4 14.1 1.0
C A:GLU136 4.5 11.2 1.0
C A:PRO139 4.7 13.6 1.0
O A:ARG137 4.7 15.1 1.0
O A:GLY140 4.8 17.8 1.0
CB A:ALA143 4.8 11.9 1.0
CB A:LEU138 4.9 11.5 1.0
N A:GLY140 4.9 16.0 1.0

Magnesium binding site 2 out of 3 in 2guh

Go back to Magnesium Binding Sites List in 2guh
Magnesium binding site 2 out of 3 in the Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:12.7
occ:1.00
O1 A:EDO506 3.1 36.5 1.0
OG A:SER105 3.1 16.0 1.0
OH A:TYR126 3.2 11.9 1.0
O A:HOH704 3.3 35.4 1.0
CE2 A:TYR126 3.6 10.0 1.0
CG2 A:THR155 3.6 11.8 1.0
CE A:MSE151 3.8 14.9 1.0
CZ A:TYR126 3.9 9.7 1.0
C1 A:EDO506 4.0 34.1 1.0
CB A:SER105 4.0 15.4 1.0
CB A:PRO103 4.1 16.9 1.0
CZ A:PHE94 4.2 10.9 1.0
CE2 A:PHE94 4.2 11.0 1.0
O A:HOH552 4.3 24.5 1.0
CE A:MSE130 4.4 19.1 1.0
CG A:PRO103 4.5 16.8 1.0
CD1 A:LEU106 4.6 14.9 0.5
CD2 A:TYR126 4.9 11.4 1.0

Magnesium binding site 3 out of 3 in 2guh

Go back to Magnesium Binding Sites List in 2guh
Magnesium binding site 3 out of 3 in the Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:12.7
occ:1.00
OG B:SER105 3.1 17.4 1.0
OH B:TYR126 3.2 14.8 1.0
O B:HOH700 3.2 28.8 1.0
O2 B:EDO507 3.6 40.1 1.0
CE2 B:TYR126 3.7 12.4 1.0
CG2 B:THR155 3.7 12.7 1.0
CZ B:TYR126 3.9 13.2 1.0
CE B:MSE151 3.9 18.4 1.0
CZ B:PHE94 4.0 14.0 1.0
CB B:SER105 4.0 16.3 1.0
CB B:PRO103 4.1 18.0 1.0
CE B:MSE130 4.1 24.2 1.0
CE1 B:PHE94 4.1 12.9 1.0
O B:HOH550 4.5 27.0 1.0
CG B:PRO103 4.5 18.7 1.0
CD2 B:LEU106 4.6 21.2 1.0
C2 B:EDO507 4.9 42.0 1.0
CG B:MSE130 4.9 19.0 1.0
CD2 B:TYR126 4.9 11.5 1.0

Reference:

Y.Kim, A.Joachimiak, T.Skarina, H.Zheng, A.Edwards, A.Savchenko. Crystal Structure of the Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. RHA1 To Be Published.
Page generated: Tue Aug 13 23:35:54 2024

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