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Magnesium in PDB 2gws: Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus

Enzymatic activity of Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus, PDB code: 2gws was solved by M.Garcia-Diaz, A.J.Picher, K.Bebenek, L.C.Pedersen, T.A.Kunkel, L.Blanco, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 192.374, 98.268, 104.960, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.3

Other elements in 2gws:

The structure of Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus also contains other interesting chemical elements:

Arsenic (As) 3 atoms
Chlorine (Cl) 1 atom
Sodium (Na) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus (pdb code 2gws). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus, PDB code: 2gws:

Magnesium binding site 1 out of 1 in 2gws

Go back to Magnesium Binding Sites List in 2gws
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Dna Polymerase Lambda with A G/G Mismatch in the Primer Terminus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg946

b:56.7
occ:1.00
O F:HOH758 2.1 51.1 1.0
O F:HOH757 2.3 50.7 1.0
O F:HOH759 2.3 43.4 1.0
O F:HOH754 2.3 53.7 1.0
O H:HOH755 2.4 49.2 1.0
O F:HOH756 2.6 47.2 1.0
N7 F:DG2 3.6 51.8 1.0
O6 F:DG3 3.7 44.4 1.0
O6 F:DG2 3.9 52.4 1.0
C5 F:DG2 4.3 51.8 1.0
O6 H:DG1 4.3 58.6 1.0
N4 H:DC2 4.4 50.0 1.0
C6 F:DG2 4.4 50.8 1.0
C8 F:DG2 4.6 52.2 1.0
C6 F:DG3 4.8 46.5 1.0
N4 F:DC4 4.9 44.3 1.0

Reference:

A.J.Picher, M.Garcia-Diaz, K.Bebenek, L.C.Pedersen, T.A.Kunkel, L.Blanco. Promiscuous Mismatch Extension By Human Dna Polymerase Lambda. Nucleic Acids Res. V. 34 3259 2006.
ISSN: ISSN 0305-1048
PubMed: 16807316
DOI: 10.1093/NAR/GKL377
Page generated: Tue Aug 13 23:36:53 2024

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