Magnesium in PDB 2gzd: Crystal Structure of RAB11 in Complex with RAB11-FIP2

All present enzymatic activity of Crystal Structure of RAB11 in Complex with RAB11-FIP2:
3.6.5.2;

The structure of Crystal Structure of RAB11 in Complex with RAB11-FIP2, PDB code: 2gzd was solved by A.R.Khan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.44
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.364, 91.149, 113.099, 90.00, 90.00, 90.00
R / Rfree (%)	22.6 / 27.9

The binding sites of Magnesium atom in the Crystal Structure of RAB11 in Complex with RAB11-FIP2 (pdb code 2gzd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of RAB11 in Complex with RAB11-FIP2, PDB code: 2gzd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of RAB11 in Complex with RAB11-FIP2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of RAB11 in Complex with RAB11-FIP2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg950 b:30.6 occ:1.00 OG1 A:THR43 1.9 37.1 1.0 OG A:SER25 2.2 31.3 1.0 O2B A:GTP900 2.3 30.9 1.0 O A:HOH951 2.3 21.1 1.0 O2G A:GTP900 2.3 30.2 1.0 CB A:THR43 3.1 37.3 1.0 PG A:GTP900 3.2 32.3 1.0 PB A:GTP900 3.4 30.6 1.0 CB A:SER25 3.6 28.8 1.0 O3B A:GTP900 3.6 34.5 1.0 OD2 A:ASP66 3.6 28.0 1.0 O3G A:GTP900 3.8 24.4 1.0 N A:THR43 3.8 37.7 1.0 CA A:THR43 4.0 37.3 1.0 OD1 A:ASP66 4.1 28.2 1.0 N A:SER25 4.1 26.5 1.0 CG2 A:THR43 4.2 36.6 1.0 CG A:ASP66 4.3 28.3 1.0 O1B A:GTP900 4.3 23.8 1.0 CA A:SER25 4.4 29.4 1.0 O A:THR67 4.4 35.3 1.0 O3A A:GTP900 4.5 33.0 1.0 O1G A:GTP900 4.5 34.4 1.0 O2A A:GTP900 4.6 38.0 1.0 CE A:LYS24 4.6 26.4 1.0 C A:THR67 4.7 34.3 1.0 C A:SER42 4.9 38.0 1.0 CB A:LYS24 4.9 25.5 1.0 O A:LYS41 4.9 40.7 1.0 CA A:ALA68 4.9 39.3 1.0 PA A:GTP900 4.9 34.4 1.0 N A:ALA68 4.9 36.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of RAB11 in Complex with RAB11-FIP2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of RAB11 in Complex with RAB11-FIP2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg950 b:27.9 occ:1.00 O B:HOH986 2.0 19.1 1.0 O2B B:GTP900 2.1 30.2 1.0 OG B:SER25 2.2 28.7 1.0 OG1 B:THR43 2.2 36.6 1.0 O2G B:GTP900 2.3 26.9 1.0 CB B:THR43 3.2 36.1 1.0 PG B:GTP900 3.4 30.8 1.0 CB B:SER25 3.4 28.1 1.0 PB B:GTP900 3.4 28.8 1.0 OD2 B:ASP66 3.4 24.1 1.0 O3B B:GTP900 3.7 33.1 1.0 OD1 B:ASP66 3.7 26.4 1.0 N B:SER25 3.8 27.1 1.0 O3G B:GTP900 3.9 25.6 1.0 CG B:ASP66 4.0 28.6 1.0 N B:THR43 4.0 36.9 1.0 CA B:SER25 4.1 28.5 1.0 CA B:THR43 4.2 36.6 1.0 CG2 B:THR43 4.2 34.2 1.0 O B:THR67 4.2 35.3 1.0 O1B B:GTP900 4.3 23.1 1.0 CB B:LYS24 4.4 25.9 1.0 O3A B:GTP900 4.5 28.6 1.0 C B:THR67 4.6 35.9 1.0 O2A B:GTP900 4.7 34.0 1.0 O1G B:GTP900 4.7 33.8 1.0 C B:LYS24 4.7 27.4 1.0 O B:HOH957 4.7 25.6 1.0 CE B:LYS24 4.7 24.4 1.0 CA B:ALA68 4.8 42.0 1.0 N B:ALA68 4.8 38.8 1.0

W.N.Jagoe, A.J.Lindsay, R.J.Read, A.J.Mccoy, M.W.Mccaffrey, A.R.Khan. Crystal Structure of RAB11 in Complex with RAB11 Family Interacting Protein 2. Structure V. 14 1273 2006.
ISSN: ISSN 0969-2126
PubMed: 16905101
DOI: 10.1016/J.STR.2006.06.010