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Magnesium in PDB 2h1c: Crystal Structure of Fitacb From Neisseria Gonorrhoeae

Protein crystallography data

The structure of Crystal Structure of Fitacb From Neisseria Gonorrhoeae, PDB code: 2h1c was solved by K.Mattison, J.S.Wilbur, M.So, R.G.Brennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.11 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.970, 50.700, 48.280, 90.00, 118.55, 90.00
R / Rfree (%) 19.1 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Fitacb From Neisseria Gonorrhoeae (pdb code 2h1c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Fitacb From Neisseria Gonorrhoeae, PDB code: 2h1c:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 2h1c

Go back to Magnesium Binding Sites List in 2h1c
Magnesium binding site 1 out of 3 in the Crystal Structure of Fitacb From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Fitacb From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:21.9
occ:1.00
O A:LEU4 2.6 15.9 1.0
OG1 A:THR39 2.7 13.7 1.0
N A:SER36 2.9 9.8 1.0
CB A:THR39 3.4 9.3 1.0
CB A:SER36 3.5 13.7 1.0
C A:LEU4 3.6 15.0 1.0
CG A:LEU3 3.6 11.2 1.0
CA A:SER36 3.7 10.6 1.0
C A:LEU35 3.8 10.7 1.0
CD1 A:LEU3 3.8 12.5 1.0
CA A:LEU35 3.8 10.2 1.0
CG2 A:THR39 4.0 15.2 1.0
CD2 A:LEU3 4.2 13.9 1.0
N A:LEU4 4.3 10.7 1.0
O A:SER36 4.4 8.8 1.0
N A:ASP5 4.4 10.9 1.0
CA A:ASP5 4.4 14.0 1.0
CG2 A:ILE107 4.5 12.0 1.0
CB A:LEU35 4.6 9.2 1.0
C A:SER36 4.6 9.3 1.0
CA A:LEU4 4.6 11.0 1.0
CD2 A:LEU35 4.6 17.1 1.0
O A:TYR34 4.6 9.2 1.0
C A:LEU3 4.6 8.9 1.0
CA A:THR39 4.7 9.9 1.0
OG A:SER36 4.7 13.8 1.0
N A:THR39 4.9 9.5 1.0
N A:LEU35 4.9 9.3 1.0
CB A:LEU3 4.9 11.9 1.0
O A:LEU35 4.9 10.9 1.0
CD1 A:ILE107 5.0 30.0 1.0

Magnesium binding site 2 out of 3 in 2h1c

Go back to Magnesium Binding Sites List in 2h1c
Magnesium binding site 2 out of 3 in the Crystal Structure of Fitacb From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Fitacb From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:24.2
occ:1.00
O A:ARG44 2.6 11.8 1.0
O A:HOH251 2.9 32.2 1.0
O A:HOH232 2.9 29.8 1.0
O A:HOH210 2.9 25.1 1.0
C A:ARG44 3.4 11.3 1.0
CA A:ARG44 3.6 8.4 1.0
CB A:ARG44 3.7 8.4 1.0
N A:ALA48 3.9 13.7 1.0
CD2 A:HIS60 3.9 30.1 1.0
CB A:ALA48 3.9 12.5 1.0
CB A:VAL47 4.0 14.9 1.0
O A:HOH231 4.1 26.4 1.0
CG A:ARG44 4.2 10.8 1.0
CG1 A:VAL47 4.3 14.5 1.0
CA A:ALA48 4.3 13.9 1.0
C A:VAL47 4.6 14.9 1.0
N A:LEU45 4.7 12.5 1.0
NE2 A:HIS60 4.7 27.8 1.0
O A:HOH254 4.8 31.9 1.0
CA A:VAL47 4.8 14.8 1.0
CG A:HIS60 4.9 25.8 1.0
OE2 A:GLU64 4.9 21.8 1.0
O A:HOH266 4.9 28.2 1.0

Magnesium binding site 3 out of 3 in 2h1c

Go back to Magnesium Binding Sites List in 2h1c
Magnesium binding site 3 out of 3 in the Crystal Structure of Fitacb From Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Fitacb From Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:21.0
occ:1.00
OG A:SER36 2.6 13.8 1.0
OG1 A:THR110 2.7 11.7 1.0
O A:LEU76 2.9 12.2 1.0
CB A:SER36 3.4 13.7 1.0
C A:PRO77 3.5 10.3 1.0
O A:PRO77 3.5 11.5 1.0
N A:PHE78 3.6 11.1 1.0
CG2 A:THR110 3.6 8.4 1.0
CB A:THR110 3.7 11.6 1.0
CA A:PHE78 3.8 9.6 1.0
N A:ALA37 3.8 8.2 1.0
CA A:SER36 3.9 10.6 1.0
C A:LEU76 3.9 10.6 1.0
CB A:PHE78 4.0 10.1 1.0
CA A:PRO77 4.2 11.4 1.0
C A:SER36 4.3 9.3 1.0
CG1 A:ILE38 4.3 15.2 1.0
N A:ILE38 4.5 9.8 1.0
N A:PRO77 4.5 9.2 1.0
CD1 A:PHE78 4.6 8.5 1.0
CB A:LEU76 4.7 9.1 1.0
O A:TYR106 4.7 13.8 1.0
CB A:ALA37 4.8 9.5 1.0
CA A:ALA37 4.8 11.9 1.0
CG A:PHE78 4.8 10.1 1.0
CA A:LEU76 4.9 9.9 1.0
CB A:ILE38 4.9 15.2 1.0
CA A:THR110 5.0 10.4 1.0

Reference:

K.Mattison, J.S.Wilbur, M.So, R.G.Brennan. Structure of Fitab From Neisseria Gonorrhoeae Bound to Dna Reveals A Tetramer of Toxin-Antitoxin Heterodimers Containing Pin Domains and Ribbon-Helix-Helix Motifs. J.Biol.Chem. V. 281 37942 2006.
ISSN: ISSN 0021-9258
PubMed: 16982615
DOI: 10.1074/JBC.M605198200
Page generated: Mon Dec 14 07:25:16 2020

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