Magnesium in PDB 2h57: Crystal Structure of Human Adp-Ribosylation Factor-Like 6

The structure of Crystal Structure of Human Adp-Ribosylation Factor-Like 6, PDB code: 2h57 was solved by J.Wang, Y.Shen, W.Tempel, R.Landry, J.Lew, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	80.058, 134.885, 63.884, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 24.5

The binding sites of Magnesium atom in the Crystal Structure of Human Adp-Ribosylation Factor-Like 6 (pdb code 2h57). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Human Adp-Ribosylation Factor-Like 6, PDB code: 2h57:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Human Adp-Ribosylation Factor-Like 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Adp-Ribosylation Factor-Like 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:26.0 occ:1.00 O2G A:GTP201 1.9 22.2 1.0 OG1 A:THR31 2.0 29.9 1.0 O A:HOH401 2.0 25.4 1.0 O A:HOH402 2.1 21.7 1.0 OG1 A:THR50 2.2 25.7 1.0 O2B A:GTP201 2.2 23.1 1.0 CB A:THR31 3.1 28.5 1.0 PG A:GTP201 3.2 25.9 1.0 CB A:THR50 3.2 26.8 1.0 PB A:GTP201 3.3 25.1 1.0 O3B A:GTP201 3.5 25.2 1.0 N A:THR50 3.6 28.4 1.0 O3G A:GTP201 3.9 25.1 1.0 N A:THR31 3.9 25.5 1.0 CA A:THR50 4.0 25.7 1.0 CA A:THR31 4.1 27.6 1.0 CG2 A:THR31 4.1 30.8 1.0 O A:HOH329 4.2 33.7 1.0 O2A A:GTP201 4.2 28.0 1.0 OD1 A:ASP69 4.2 27.1 1.0 OD2 A:ASP69 4.2 28.1 1.0 O1G A:GTP201 4.3 24.6 1.0 CG2 A:THR50 4.3 28.2 1.0 O1B A:GTP201 4.3 26.0 1.0 O3A A:GTP201 4.3 25.4 1.0 O A:LEU48 4.5 34.3 1.0 PA A:GTP201 4.6 25.4 1.0 CG A:ASP69 4.6 28.3 1.0 C A:PRO49 4.6 30.1 1.0 O A:MET70 4.6 25.4 1.0 O1A A:GTP201 4.6 26.8 1.0 CB A:LYS30 4.8 26.1 1.0 CA A:PRO49 4.9 29.2 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Human Adp-Ribosylation Factor-Like 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Adp-Ribosylation Factor-Like 6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:27.7 occ:1.00 OG1 B:THR31 1.9 28.1 1.0 O2B B:GTP201 2.0 27.0 1.0 O B:HOH407 2.0 24.3 1.0 O2G B:GTP201 2.1 31.8 1.0 O B:HOH406 2.1 24.4 1.0 OG1 B:THR50 2.2 30.2 1.0 CB B:THR31 3.0 31.6 1.0 CB B:THR50 3.2 31.8 1.0 PB B:GTP201 3.2 29.2 1.0 PG B:GTP201 3.3 28.8 1.0 O3B B:GTP201 3.6 29.9 1.0 N B:THR50 3.7 33.0 1.0 N B:THR31 3.9 29.9 1.0 CA B:THR31 4.0 31.6 1.0 CA B:THR50 4.1 33.3 1.0 CG2 B:THR31 4.1 33.1 1.0 O3G B:GTP201 4.1 28.6 1.0 O2A B:GTP201 4.1 31.9 1.0 OD2 B:ASP69 4.1 27.0 1.0 OD1 B:ASP69 4.2 27.6 1.0 O1B B:GTP201 4.3 22.6 1.0 O B:HOH345 4.3 36.5 1.0 O3A B:GTP201 4.3 26.5 1.0 CG2 B:THR50 4.4 30.3 1.0 O B:MET70 4.4 31.2 1.0 O1G B:GTP201 4.4 30.7 1.0 O B:LEU48 4.5 40.1 1.0 CG B:ASP69 4.5 26.1 1.0 PA B:GTP201 4.6 31.9 1.0 O1A B:GTP201 4.6 30.7 1.0 C B:PRO49 4.7 37.1 1.0 CB B:LYS30 4.8 29.9 1.0 CA B:PRO49 4.9 35.0 1.0 CE B:LYS30 4.9 28.9 1.0 C B:LYS30 5.0 28.0 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Human Adp-Ribosylation Factor-Like 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Human Adp-Ribosylation Factor-Like 6 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg202 b:30.6 occ:1.00 O C:HOH410 2.0 27.8 1.0 O2B C:GTP201 2.1 31.4 1.0 OG1 C:THR31 2.1 32.7 1.0 O2G C:GTP201 2.1 31.6 1.0 O C:HOH411 2.1 27.4 1.0 OG1 C:THR50 2.2 33.9 1.0 CB C:THR31 3.2 32.0 1.0 CB C:THR50 3.2 36.1 1.0 PG C:GTP201 3.2 29.7 1.0 PB C:GTP201 3.3 30.3 1.0 O3B C:GTP201 3.5 29.4 1.0 N C:THR50 3.7 31.4 1.0 O3G C:GTP201 3.9 29.3 1.0 N C:THR31 4.0 32.3 1.0 CA C:THR50 4.1 36.4 1.0 CA C:THR31 4.2 34.2 1.0 OD2 C:ASP69 4.2 33.3 1.0 O2A C:GTP201 4.2 30.2 1.0 OD1 C:ASP69 4.2 33.1 1.0 CG2 C:THR31 4.2 33.5 1.0 O C:HOH363 4.3 34.5 1.0 O1B C:GTP201 4.4 26.8 1.0 O3A C:GTP201 4.4 31.8 1.0 CG2 C:THR50 4.4 36.8 1.0 O1G C:GTP201 4.4 28.6 1.0 O C:LEU48 4.4 34.8 1.0 CG C:ASP69 4.6 35.1 1.0 PA C:GTP201 4.6 30.8 1.0 O C:MET70 4.6 29.4 1.0 O1A C:GTP201 4.6 31.0 1.0 CB C:LYS30 4.7 31.9 1.0 C C:PRO49 4.7 33.4 1.0 CE C:LYS30 4.9 31.1 1.0 CA C:PRO49 5.0 33.4 1.0

J.Wang, Y.Shen, W.Tempel, R.Landry, J.Lew, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park. Crystal Structure of Human Adp-Ribosylation Factor-Like 6 (Casp Target) To Be Published.