Magnesium in PDB 2h7v: Co-Crystal Structure of Ypka-RAC1

The structure of Co-Crystal Structure of Ypka-RAC1, PDB code: 2h7v was solved by G.Prehna, M.Ivanov, J.B.Bliska, C.E.Stebbins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	95.78 / 2.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	66.398, 75.519, 99.772, 92.08, 103.38, 115.79
R / Rfree (%)	22.2 / 25.7

The binding sites of Magnesium atom in the Co-Crystal Structure of Ypka-RAC1 (pdb code 2h7v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Co-Crystal Structure of Ypka-RAC1, PDB code: 2h7v:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Co-Crystal Structure of Ypka-RAC1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Co-Crystal Structure of Ypka-RAC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:49.4 occ:1.00 O A:THR35 1.9 71.2 1.0 OG1 A:THR17 2.4 58.1 1.0 O3B A:GDP200 2.5 52.5 1.0 O1B A:GDP200 3.0 50.8 1.0 C A:THR35 3.1 71.2 1.0 PB A:GDP200 3.2 52.6 1.0 CB A:THR17 3.3 61.4 1.0 O2A A:GDP200 3.6 60.5 1.0 CA A:THR35 3.7 71.6 1.0 O A:PRO34 3.9 72.5 1.0 N A:VAL36 4.2 71.6 1.0 CG2 A:THR17 4.2 61.3 1.0 O3A A:GDP200 4.2 54.4 1.0 O2B A:GDP200 4.3 54.4 1.0 N A:THR17 4.4 61.5 1.0 CG2 A:THR35 4.4 71.6 1.0 PA A:GDP200 4.5 60.9 1.0 CA A:THR17 4.5 61.7 1.0 O A:THR58 4.5 66.9 1.0 OD2 A:ASP57 4.6 62.0 1.0 CA A:VAL36 4.7 72.1 1.0 CB A:THR35 4.7 71.1 1.0 N A:THR35 4.7 71.7 1.0 C A:PRO34 4.7 72.1 1.0 OD1 A:ASP57 4.9 59.9 1.0 O1A A:GDP200 4.9 62.3 1.0 CE A:LYS16 5.0 57.6 1.0

Magnesium binding site 2 out of 2 in the Co-Crystal Structure of Ypka-RAC1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Co-Crystal Structure of Ypka-RAC1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:63.9 occ:1.00 O B:THR35 2.0 64.5 1.0 O3B B:GDP200 2.1 60.9 1.0 OG1 B:THR17 2.3 59.6 1.0 O1B B:GDP200 3.1 60.0 1.0 C B:THR35 3.2 65.6 1.0 PB B:GDP200 3.2 59.6 1.0 CB B:THR17 3.3 60.3 1.0 OD2 B:ASP57 4.0 68.2 1.0 N B:THR17 4.0 60.3 1.0 CA B:THR35 4.0 65.4 1.0 O2B B:GDP200 4.1 58.5 1.0 N B:VAL36 4.2 66.7 1.0 CA B:THR17 4.2 60.6 1.0 O B:PRO34 4.3 65.3 1.0 O B:THR58 4.3 65.0 1.0 O2A B:GDP200 4.3 63.3 1.0 OD1 B:ASP57 4.4 66.0 1.0 CG2 B:THR17 4.4 59.9 1.0 O3A B:GDP200 4.5 62.5 1.0 CA B:VAL36 4.5 67.4 1.0 CG B:ASP57 4.6 66.8 1.0 CG2 B:THR35 4.7 65.1 1.0 CB B:ALA59 4.8 66.8 1.0 PA B:GDP200 4.8 65.5 1.0 NZ B:LYS16 4.8 55.1 1.0 CE B:LYS16 4.9 54.7 1.0

G.Prehna, M.I.Ivanov, J.B.Bliska, C.E.Stebbins. Yersinia Virulence Depends on Mimicry of Host Rho-Family Nucleotide Dissociation Inhibitors. Cell(Cambridge,Mass.) V. 126 869 2006.
ISSN: ISSN 0092-8674
PubMed: 16959567
DOI: 10.1016/J.CELL.2006.06.056