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Magnesium in PDB 2hcf: Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution, PDB code: 2hcf was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.95 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.750, 71.590, 83.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 24.7

Other elements in 2hcf:

The structure of Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution (pdb code 2hcf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution, PDB code: 2hcf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2hcf

Go back to Magnesium Binding Sites List in 2hcf
Magnesium binding site 1 out of 2 in the Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg300

b:15.1
occ:1.00
OD2 A:ASP9 2.0 17.2 1.0
O A:HOH313 2.1 13.9 1.0
OD1 A:ASP177 2.1 19.7 1.0
O A:HOH326 2.1 16.0 1.0
O A:ASP11 2.1 17.2 1.0
O A:HOH325 2.2 17.2 1.0
CG A:ASP9 3.0 21.9 1.0
CG A:ASP177 3.1 19.5 1.0
C A:ASP11 3.4 18.8 1.0
OD1 A:ASP9 3.4 21.6 1.0
OD2 A:ASP177 3.6 19.3 1.0
O A:HOH342 4.1 22.4 1.0
OG1 A:THR13 4.1 14.0 1.0
CA A:ASP11 4.2 18.8 1.0
N A:ASP11 4.2 18.8 1.0
OD2 A:ASP181 4.2 21.5 1.0
CB A:ASP9 4.3 20.3 1.0
CG2 A:THR178 4.3 16.7 1.0
N A:GLY12 4.4 19.1 1.0
CB A:ASP177 4.5 17.9 1.0
CB A:ASP11 4.5 19.0 1.0
N A:GLY46 4.5 29.1 1.0
O A:HOH384 4.5 29.4 1.0
CA A:GLY12 4.6 18.4 1.0
O A:HOH303 4.6 10.7 1.0
N A:ASP177 4.6 18.7 1.0
O A:HOH383 4.7 28.0 1.0
CA A:GLY46 4.7 27.9 1.0
OD1 A:ASP181 4.8 28.5 1.0
C A:GLY12 4.8 18.7 1.0
N A:THR13 4.8 17.9 1.0
C A:ILE10 4.9 18.8 1.0
CG A:ASP181 4.9 21.6 1.0

Magnesium binding site 2 out of 2 in 2hcf

Go back to Magnesium Binding Sites List in 2hcf
Magnesium binding site 2 out of 2 in the Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Hydrolase Haloacid Dehalogenase-Like Family (NP_662590.1) From Chlorobium Tepidum Tls at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:33.6
occ:1.00
O A:HOH532 1.9 28.7 1.0
OE2 A:GLU63 2.0 26.9 1.0
O A:HOH533 2.2 38.7 1.0
O A:HOH531 2.2 33.4 1.0
O A:HOH460 2.3 26.4 1.0
CD A:GLU63 3.1 29.1 1.0
OE1 A:GLU63 3.4 31.7 1.0
O A:GLY61 4.3 16.5 1.0
CG A:GLU63 4.4 24.9 1.0
O A:HOH449 4.5 40.5 1.0
O A:HOH369 4.6 29.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Dec 14 07:25:33 2020

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