Magnesium in PDB 2hfz: Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus

Enzymatic activity of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus

All present enzymatic activity of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus, PDB code: 2hfz was solved by M.P.Egloff, H.Malet, Marseilles Structural Genomics Program @Afmb (Msgp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	95.35 / 3.00
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	73.333, 103.449, 190.074, 90.00, 90.00, 90.00
*R / R_free (%)*	26 / 26.5

Other elements in 2hfz:

The structure of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus (pdb code 2hfz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus, PDB code: 2hfz:

Magnesium binding site 1 out of 1 in 2hfz

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Magnesium Binding Sites List in 2hfz

Magnesium binding site 1 out of 1 in the Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg906 b:80.0 occ:1.00	OD1	A:ASP536	2.7	93.6	1.0
	OD1	A:ASP669	2.7	85.7	1.0
	O	A:ALA534	3.2	92.7	1.0
	O	A:CYS670	3.5	84.4	1.0
	CG	A:ASP536	3.7	93.6	1.0
	C	A:ALA534	3.7	92.7	1.0
	CB	A:ALA534	3.8	93.4	1.0
	CG	A:ASP669	4.0	85.7	1.0
	OD2	A:ASP536	4.1	93.6	1.0
	O	A:ASP535	4.1	92.5	1.0
	N	A:CYS670	4.1	84.4	1.0
	CA	A:ALA534	4.1	92.7	1.0
	O	A:PRO712	4.3	80.2	1.0
	C	A:ASP535	4.3	92.5	1.0
	N	A:ASP535	4.5	92.5	1.0
	C	A:CYS670	4.6	84.4	1.0
	OD2	A:ASP669	4.6	85.7	1.0
	N	A:ASP536	4.7	91.8	1.0
	CA	A:ASP669	4.8	83.5	1.0
	CB	A:ASP536	4.8	93.6	1.0
	CA	A:ASP536	4.9	91.8	1.0
	CA	A:ASP535	4.9	92.5	1.0
	CA	A:CYS670	4.9	84.4	1.0
	C	A:ASP669	5.0	83.5	1.0

Reference:

H.Malet, M.P.Egloff, B.Selisko, R.E.Butcher, P.J.Wright, M.Roberts, A.Gruez, G.Sulzenbacher, C.Vonrhein, G.Bricogne, J.M.Mackenzie, A.A.Khromykh, A.D.Davidson, B.Canard. Crystal Structure of the Rna Polymerase Domain of the West Nile Virus Non-Structural Protein 5 J.Biol.Chem. V. 282 10678 2007.
ISSN: ISSN 0021-9258
PubMed: 17287213
DOI: 10.1074/JBC.M607273200

Page generated: Tue Aug 13 23:51:11 2024

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