Atomistry » Magnesium » PDB 2hld-2hxf » 2hne
Atomistry »
  Magnesium »
    PDB 2hld-2hxf »
      2hne »

Magnesium in PDB 2hne: Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

Enzymatic activity of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

All present enzymatic activity of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913:
4.2.1.68;

Protein crystallography data

The structure of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 2hne was solved by A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo, S.K.Burley, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.68 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.633, 130.633, 195.829, 90.00, 90.00, 120.00
R / Rfree (%) 24.1 / 27.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 (pdb code 2hne). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 2hne:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 1 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:31.0
occ:1.00
 OE1 A:GLU301 2.2 32.7 1.0
OD2 A:ASP248 2.2 28.0 1.0
OE2 A:GLU274 2.2 28.9 1.0
O A:HOH675 2.2 24.5 1.0
O A:HOH676 2.4 34.1 1.0
O A:HOH677 2.4 36.8 1.0
CD A:GLU301 3.1 34.6 1.0
CD A:GLU274 3.2 27.3 1.0
CG A:ASP248 3.2 25.1 1.0
OE2 A:GLU301 3.4 35.9 1.0
OD1 A:ASP248 3.5 22.8 1.0
CG A:GLU274 3.7 26.9 1.0
NZ A:LYS218 3.8 38.4 1.0
OD1 A:ASN250 4.2 32.8 1.0
OE1 A:GLU274 4.2 30.2 1.0
OE2 A:GLU275 4.3 30.5 1.0
O A:HOH602 4.4 28.8 1.0
CG A:GLU301 4.4 31.9 1.0
ND1 A:HIS351 4.5 34.6 1.0
CB A:ASP248 4.5 23.6 1.0
CE A:LYS218 4.6 30.1 1.0
CB A:GLU274 4.8 24.9 1.0
CE1 A:HIS351 4.8 33.8 1.0
CG A:GLU275 4.9 28.3 1.0
CG A:ASN250 5.0 32.2 1.0

Magnesium binding site 2 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 2 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:31.4
occ:1.00
 OE1 B:GLU301 2.2 29.1 1.0
OD2 B:ASP248 2.2 20.8 1.0
O B:HOH693 2.2 26.5 1.0
O B:HOH692 2.3 34.3 1.0
O B:HOH691 2.3 23.7 1.0
OE2 B:GLU274 2.3 29.2 1.0
CD B:GLU301 2.9 29.9 1.0
OE2 B:GLU301 3.0 29.1 1.0
CG B:ASP248 3.2 23.9 1.0
CD B:GLU274 3.4 30.5 1.0
OD1 B:ASP248 3.5 22.7 1.0
NZ B:LYS220 3.6 27.6 1.0
CG B:GLU274 4.1 29.3 1.0
OD1 B:ASN250 4.1 30.3 1.0
ND1 B:HIS351 4.2 31.5 1.0
CG B:GLU301 4.3 28.3 1.0
O B:HOH610 4.3 26.1 1.0
OE2 B:GLU275 4.3 30.5 1.0
NZ B:LYS218 4.3 34.0 1.0
OE1 B:GLU274 4.4 29.3 1.0
CB B:ASP248 4.5 22.4 1.0
CE1 B:HIS351 4.5 29.2 1.0
O B:HOH629 4.8 41.8 1.0
CG B:ASN250 4.8 28.6 1.0
CB B:GLU301 4.9 28.1 1.0
ND2 B:ASN250 5.0 21.8 1.0
CB B:GLU274 5.0 27.0 1.0

Magnesium binding site 3 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 3 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg603

b:37.3
occ:1.00
 OE1 C:GLU301 2.2 27.1 1.0
OD2 C:ASP248 2.2 26.5 1.0
OE2 C:GLU274 2.3 33.1 1.0
O C:HOH665 2.3 34.1 1.0
O C:HOH664 2.4 30.0 1.0
O C:HOH666 2.5 41.9 1.0
CD C:GLU301 3.0 32.1 1.0
OE2 C:GLU301 3.3 32.9 1.0
CG C:ASP248 3.3 27.1 1.0
CD C:GLU274 3.4 33.0 1.0
NZ C:LYS220 3.8 38.6 1.0
OD1 C:ASP248 3.8 25.8 1.0
NZ C:LYS218 3.9 35.4 1.0
CG C:GLU274 4.1 32.3 1.0
OD1 C:ASN250 4.1 33.3 1.0
ND1 C:HIS351 4.1 41.5 1.0
OE1 C:GLU274 4.2 34.8 1.0
OE2 C:GLU275 4.3 35.5 1.0
CE1 C:HIS351 4.3 40.4 1.0
CG C:GLU301 4.3 32.1 1.0
O C:HOH652 4.5 33.8 1.0
CB C:ASP248 4.6 25.0 1.0
CE C:LYS218 4.8 34.5 1.0
CG C:ASN250 4.9 29.1 1.0

Magnesium binding site 4 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 4 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg604

b:56.1
occ:1.00
 OD2 D:ASP248 2.2 34.4 1.0
OE1 D:GLU301 2.2 40.9 1.0
O D:HOH668 2.3 34.5 1.0
O D:HOH669 2.3 43.2 1.0
OE2 D:GLU274 2.5 34.9 1.0
O D:HOH667 2.6 44.7 1.0
CD D:GLU301 3.0 37.7 1.0
OE2 D:GLU301 3.2 40.4 1.0
CG D:ASP248 3.3 34.4 1.0
NZ D:LYS220 3.5 39.2 1.0
CD D:GLU274 3.6 33.7 1.0
NZ D:LYS218 3.8 39.7 1.0
OD1 D:ASP248 3.8 33.9 1.0
ND1 D:HIS351 4.0 34.6 1.0
CE1 D:HIS351 4.1 33.2 1.0
OE1 D:GLU274 4.4 34.9 1.0
CG D:GLU274 4.4 31.6 1.0
CG D:GLU301 4.4 36.7 1.0
CB D:ASP248 4.5 33.8 1.0
OD1 D:ASN250 4.5 37.0 1.0
OE2 D:GLU382 4.8 43.9 1.0
O D:HOH613 4.8 29.2 1.0
CE D:LYS220 4.9 38.7 1.0
OE2 D:GLU275 4.9 41.1 1.0
CE D:LYS218 4.9 40.5 1.0
ND2 D:ASN250 5.0 33.2 1.0
CB D:GLU301 5.0 31.1 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo. Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 To Be Published.
Page generated: Tue Aug 13 23:54:41 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy