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Magnesium in PDB 2hne: Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

Enzymatic activity of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913

All present enzymatic activity of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913:
4.2.1.68;

Protein crystallography data

The structure of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 2hne was solved by A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo, S.K.Burley, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.68 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.633, 130.633, 195.829, 90.00, 90.00, 120.00
R / Rfree (%) 24.1 / 27.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 (pdb code 2hne). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913, PDB code: 2hne:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 1 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:31.0
occ:1.00
 OE1 A:GLU301 2.2 32.7 1.0
OD2 A:ASP248 2.2 28.0 1.0
OE2 A:GLU274 2.2 28.9 1.0
O A:HOH675 2.2 24.5 1.0
O A:HOH676 2.4 34.1 1.0
O A:HOH677 2.4 36.8 1.0
CD A:GLU301 3.1 34.6 1.0
CD A:GLU274 3.2 27.3 1.0
CG A:ASP248 3.2 25.1 1.0
OE2 A:GLU301 3.4 35.9 1.0
OD1 A:ASP248 3.5 22.8 1.0
CG A:GLU274 3.7 26.9 1.0
NZ A:LYS218 3.8 38.4 1.0
OD1 A:ASN250 4.2 32.8 1.0
OE1 A:GLU274 4.2 30.2 1.0
OE2 A:GLU275 4.3 30.5 1.0
O A:HOH602 4.4 28.8 1.0
CG A:GLU301 4.4 31.9 1.0
ND1 A:HIS351 4.5 34.6 1.0
CB A:ASP248 4.5 23.6 1.0
CE A:LYS218 4.6 30.1 1.0
CB A:GLU274 4.8 24.9 1.0
CE1 A:HIS351 4.8 33.8 1.0
CG A:GLU275 4.9 28.3 1.0
CG A:ASN250 5.0 32.2 1.0

Magnesium binding site 2 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 2 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:31.4
occ:1.00
 OE1 B:GLU301 2.2 29.1 1.0
OD2 B:ASP248 2.2 20.8 1.0
O B:HOH693 2.2 26.5 1.0
O B:HOH692 2.3 34.3 1.0
O B:HOH691 2.3 23.7 1.0
OE2 B:GLU274 2.3 29.2 1.0
CD B:GLU301 2.9 29.9 1.0
OE2 B:GLU301 3.0 29.1 1.0
CG B:ASP248 3.2 23.9 1.0
CD B:GLU274 3.4 30.5 1.0
OD1 B:ASP248 3.5 22.7 1.0
NZ B:LYS220 3.6 27.6 1.0
CG B:GLU274 4.1 29.3 1.0
OD1 B:ASN250 4.1 30.3 1.0
ND1 B:HIS351 4.2 31.5 1.0
CG B:GLU301 4.3 28.3 1.0
O B:HOH610 4.3 26.1 1.0
OE2 B:GLU275 4.3 30.5 1.0
NZ B:LYS218 4.3 34.0 1.0
OE1 B:GLU274 4.4 29.3 1.0
CB B:ASP248 4.5 22.4 1.0
CE1 B:HIS351 4.5 29.2 1.0
O B:HOH629 4.8 41.8 1.0
CG B:ASN250 4.8 28.6 1.0
CB B:GLU301 4.9 28.1 1.0
ND2 B:ASN250 5.0 21.8 1.0
CB B:GLU274 5.0 27.0 1.0

Magnesium binding site 3 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 3 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg603

b:37.3
occ:1.00
 OE1 C:GLU301 2.2 27.1 1.0
OD2 C:ASP248 2.2 26.5 1.0
OE2 C:GLU274 2.3 33.1 1.0
O C:HOH665 2.3 34.1 1.0
O C:HOH664 2.4 30.0 1.0
O C:HOH666 2.5 41.9 1.0
CD C:GLU301 3.0 32.1 1.0
OE2 C:GLU301 3.3 32.9 1.0
CG C:ASP248 3.3 27.1 1.0
CD C:GLU274 3.4 33.0 1.0
NZ C:LYS220 3.8 38.6 1.0
OD1 C:ASP248 3.8 25.8 1.0
NZ C:LYS218 3.9 35.4 1.0
CG C:GLU274 4.1 32.3 1.0
OD1 C:ASN250 4.1 33.3 1.0
ND1 C:HIS351 4.1 41.5 1.0
OE1 C:GLU274 4.2 34.8 1.0
OE2 C:GLU275 4.3 35.5 1.0
CE1 C:HIS351 4.3 40.4 1.0
CG C:GLU301 4.3 32.1 1.0
O C:HOH652 4.5 33.8 1.0
CB C:ASP248 4.6 25.0 1.0
CE C:LYS218 4.8 34.5 1.0
CG C:ASN250 4.9 29.1 1.0

Magnesium binding site 4 out of 4 in 2hne

Go back to Magnesium Binding Sites List in 2hne
Magnesium binding site 4 out of 4 in the Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg604

b:56.1
occ:1.00
 OD2 D:ASP248 2.2 34.4 1.0
OE1 D:GLU301 2.2 40.9 1.0
O D:HOH668 2.3 34.5 1.0
O D:HOH669 2.3 43.2 1.0
OE2 D:GLU274 2.5 34.9 1.0
O D:HOH667 2.6 44.7 1.0
CD D:GLU301 3.0 37.7 1.0
OE2 D:GLU301 3.2 40.4 1.0
CG D:ASP248 3.3 34.4 1.0
NZ D:LYS220 3.5 39.2 1.0
CD D:GLU274 3.6 33.7 1.0
NZ D:LYS218 3.8 39.7 1.0
OD1 D:ASP248 3.8 33.9 1.0
ND1 D:HIS351 4.0 34.6 1.0
CE1 D:HIS351 4.1 33.2 1.0
OE1 D:GLU274 4.4 34.9 1.0
CG D:GLU274 4.4 31.6 1.0
CG D:GLU301 4.4 36.7 1.0
CB D:ASP248 4.5 33.8 1.0
OD1 D:ASN250 4.5 37.0 1.0
OE2 D:GLU382 4.8 43.9 1.0
O D:HOH613 4.8 29.2 1.0
CE D:LYS220 4.9 38.7 1.0
OE2 D:GLU275 4.9 41.1 1.0
CE D:LYS218 4.9 40.5 1.0
ND2 D:ASN250 5.0 33.2 1.0
CB D:GLU301 5.0 31.1 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo. Crystal Structure of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 To Be Published.
Page generated: Tue Aug 13 23:54:41 2024

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