Atomistry » Magnesium » PDB 2hld-2hxf » 2hsj
Atomistry »
  Magnesium »
    PDB 2hld-2hxf »
      2hsj »

Magnesium in PDB 2hsj: The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.

Protein crystallography data

The structure of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia., PDB code: 2hsj was solved by M.E.Cuff, R.Mulligan, J.Abdullah, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.46 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.032, 120.063, 84.743, 90.00, 99.48, 90.00
R / Rfree (%) 16 / 19.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. (pdb code 2hsj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia., PDB code: 2hsj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 1 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:12.9
occ:1.00
 O A:VAL167 2.3 9.5 1.0
O A:ALA161 2.3 9.3 1.0
O A:TYR164 2.3 8.4 1.0
O A:HOH1449 2.6 17.8 1.0
C A:ALA161 3.3 9.3 1.0
C A:TYR164 3.4 9.8 1.0
C A:VAL167 3.5 10.3 1.0
CA A:SER162 4.0 8.0 0.5
CA A:SER162 4.1 9.1 0.5
N A:SER162 4.1 8.1 0.5
N A:SER162 4.1 8.7 0.5
N A:VAL167 4.1 9.6 1.0
N A:TYR164 4.2 9.2 1.0
CA A:MSE165 4.2 10.5 1.0
CA A:VAL167 4.2 10.1 1.0
N A:MSE165 4.2 10.0 1.0
O A:MSE165 4.2 10.7 1.0
C A:MSE165 4.3 10.8 1.0
C A:SER162 4.3 7.9 0.5
C A:SER162 4.3 8.5 0.5
CA A:ALA161 4.3 9.3 1.0
CA A:TYR164 4.4 9.2 1.0
O A:HOH1669 4.4 48.0 1.0
CB A:VAL167 4.4 10.8 1.0
N A:GLU168 4.5 9.6 1.0
O A:HOH1451 4.5 16.5 1.0
CB A:ALA161 4.6 10.4 1.0
O A:SER162 4.6 7.5 0.5
O A:SER162 4.7 8.1 0.5
CA A:GLU168 4.7 10.2 1.0
N A:ALA163 4.8 8.1 1.0
CB A:TYR164 5.0 10.5 1.0
N A:GLN166 5.0 10.8 1.0

Magnesium binding site 2 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 2 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1302

b:17.6
occ:1.00
 O B:HOH1701 2.0 15.6 1.0
O B:HOH1703 2.1 19.7 1.0
O B:HOH1539 4.1 26.0 1.0
OE1 B:GLN179 4.1 22.1 1.0
OE1 B:GLU186 4.1 10.7 1.0
O B:HOH1454 4.1 15.4 1.0
OE2 B:GLU186 4.2 11.0 1.0
CB B:ASP178 4.4 12.5 1.0
O B:HOH1599 4.5 40.8 1.0
CD B:GLU186 4.6 10.8 1.0

Magnesium binding site 3 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 3 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1305

b:14.1
occ:1.00
 O B:VAL167 2.3 11.2 1.0
O B:TYR164 2.3 14.8 1.0
O B:ALA161 2.3 12.6 1.0
O B:HOH1476 2.4 20.4 1.0
O B:HOH1465 2.5 20.7 1.0
O B:HOH1547 2.6 24.4 1.0
C B:TYR164 3.4 15.1 1.0
C B:ALA161 3.4 11.9 1.0
C B:VAL167 3.5 9.3 1.0
N B:VAL167 4.0 11.3 1.0
N B:TYR164 4.0 12.7 1.0
CA B:SER162 4.1 12.9 1.0
CA B:VAL167 4.2 10.5 1.0
N B:SER162 4.2 11.8 1.0
O B:MSE165 4.2 16.6 1.0
CA B:TYR164 4.3 13.3 1.0
C B:SER162 4.3 13.1 1.0
N B:MSE165 4.3 16.9 1.0
C B:MSE165 4.3 16.6 1.0
CA B:MSE165 4.3 18.7 1.0
CA B:ALA161 4.4 11.5 1.0
CB B:VAL167 4.4 10.3 1.0
O B:SER162 4.4 14.8 1.0
O B:HOH1460 4.5 16.7 1.0
N B:GLU168 4.6 9.5 1.0
CB B:ALA161 4.7 11.5 1.0
N B:ALA163 4.8 11.6 1.0
CA B:GLU168 4.8 9.8 1.0
CB B:TYR164 4.9 12.6 1.0
N B:GLN166 5.0 14.9 1.0

Magnesium binding site 4 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 4 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1306

b:34.7
occ:1.00
 O B:HOH1528 2.0 24.3 1.0
O D:HOH1517 2.0 24.4 1.0
O B:HOH1611 2.1 42.0 1.0
O D:HOH1676 2.5 48.8 1.0
O B:TYR211 2.5 29.6 1.0
O D:HOH1587 2.7 46.9 1.0
O D:HOH1681 2.7 44.2 1.0
C B:TYR211 3.6 27.8 1.0
NZ B:LYS85 3.7 21.6 1.0
OXT D:TYR211 3.8 23.5 1.0
OXT B:TYR211 3.9 29.6 1.0
OE2 D:GLU123 4.0 24.6 1.0
O D:HOH1491 4.2 30.4 1.0
OE2 B:GLU123 4.2 18.2 1.0
NZ D:LYS85 4.2 20.2 1.0
OE1 D:GLU123 4.2 19.9 1.0
OE1 B:GLU123 4.3 18.1 1.0
O B:HOH1706 4.3 48.7 1.0
CD D:GLU123 4.3 20.2 1.0
O D:HOH1486 4.4 23.1 1.0
CE B:LYS85 4.5 18.9 1.0
CD B:GLU123 4.6 14.3 1.0
O D:HOH1564 4.8 32.2 1.0
O B:HOH1529 4.8 28.0 1.0
CA B:TYR211 4.9 27.1 1.0
CE D:LYS85 5.0 19.8 1.0

Magnesium binding site 5 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 5 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1303

b:19.4
occ:1.00
 O C:HOH1729 2.0 19.5 1.0
O C:HOH1733 2.1 22.2 1.0
O C:HOH1754 2.2 22.7 1.0
O C:HOH1730 2.2 17.5 1.0
O C:ASN106 4.3 9.2 1.0
OD1 C:ASN106 4.5 16.4 1.0
O C:HOH1449 4.6 16.9 1.0
OE1 C:GLN113 4.6 21.0 1.0
OE1 C:GLU109 4.7 20.7 1.0
CB C:ALA110 4.8 8.5 1.0
O C:HOH1669 4.8 35.7 1.0
CB C:ASN106 4.8 9.6 1.0
CG C:ASN106 4.9 14.2 1.0
N C:ALA110 5.0 8.2 1.0

Magnesium binding site 6 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 6 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1304

b:10.5
occ:1.00
 O D:VAL167 2.3 9.9 1.0
O D:ALA161 2.3 10.0 1.0
O D:TYR164 2.3 9.2 1.0
O D:HOH1443 2.6 16.3 1.0
C D:ALA161 3.4 9.0 1.0
C D:TYR164 3.4 9.7 1.0
C D:VAL167 3.5 9.5 1.0
O D:HOH1526 4.0 34.3 1.0
CA D:SER162 4.0 8.7 1.0
N D:VAL167 4.1 9.5 1.0
N D:SER162 4.2 9.0 1.0
CA D:MSE165 4.2 9.8 1.0
N D:TYR164 4.2 9.6 1.0
CA D:VAL167 4.2 10.4 1.0
O D:MSE165 4.2 11.2 1.0
C D:MSE165 4.2 10.2 1.0
N D:MSE165 4.2 9.3 1.0
C D:SER162 4.3 8.0 1.0
CA D:TYR164 4.4 10.2 1.0
CA D:ALA161 4.4 9.1 1.0
CB D:VAL167 4.4 9.9 1.0
N D:GLU168 4.5 9.7 1.0
CB D:ALA161 4.6 9.1 1.0
O D:HOH1408 4.6 13.0 1.0
O D:SER162 4.7 9.0 1.0
CA D:GLU168 4.7 10.2 1.0
N D:ALA163 4.8 8.6 1.0
O D:HOH1483 4.8 23.8 1.0
N D:GLN166 4.9 9.8 1.0
CB D:TYR164 5.0 10.6 1.0

Magnesium binding site 7 out of 7 in 2hsj

Go back to Magnesium Binding Sites List in 2hsj
Magnesium binding site 7 out of 7 in the The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1307

b:32.7
occ:1.00
 O D:HOH1685 2.1 28.6 1.0
O D:HOH1682 2.1 29.8 1.0
O D:HOH1683 2.1 26.0 1.0
O D:HOH1684 2.3 34.5 1.0
O D:HOH1686 2.3 54.0 1.0
O D:HOH1627 3.8 46.9 1.0
O D:HOH1489 4.3 23.7 1.0
O D:HOH1573 4.3 40.5 1.0
OE2 D:GLU168 4.4 20.0 1.0
O D:ASP208 4.4 17.3 1.0
CD1 D:TYR209 4.4 16.3 1.0
OE1 D:GLU168 4.5 16.8 1.0
CE1 D:TYR209 4.6 15.9 1.0
CD D:GLU168 4.9 16.1 1.0
C D:ASP208 4.9 16.8 1.0
CA D:TYR209 4.9 14.0 1.0

Reference:

M.E.Cuff, R.Mulligan, J.Abdullah, A.Joachimiak. The Structure of A Putative Platelet Activating Factor From Streptococcus Pneumonia. To Be Published.
Page generated: Tue Aug 13 23:58:51 2024

Last articles

Cl in 2XAT
Cl in 2X8R
Cl in 2XA4
Cl in 2X9H
Cl in 2X9D
Cl in 2X8S
Cl in 2X8T
Cl in 2X8B
Cl in 2X76
Cl in 2X7A
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy