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Magnesium in PDB 2hw8: Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution.

Protein crystallography data

The structure of Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution., PDB code: 2hw8 was solved by S.Tishchenko, E.Nikonova, A.Nikulin, N.Nevskaya, S.Volchkov, W.Piendl, M.Garber, S.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.10
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.870, 67.870, 340.470, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / 24.7

Other elements in 2hw8:

The structure of Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution. also contains other interesting chemical elements:

Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution. (pdb code 2hw8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution., PDB code: 2hw8:

Magnesium binding site 1 out of 1 in 2hw8

Go back to Magnesium Binding Sites List in 2hw8
Magnesium binding site 1 out of 1 in the Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ribosomal Protein L1-Mrna Complex at 2.1 Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:38.4
occ:1.00
O B:HOH282 1.9 38.3 1.0
O B:HOH210 2.1 25.9 1.0
O B:HOH257 2.1 40.0 1.0
O B:HOH217 2.2 33.4 1.0
O B:HOH237 2.3 37.8 1.0
O B:HOH232 2.4 34.0 1.0
O B:HOH220 3.6 37.8 1.0
O2' B:A26 4.0 36.2 1.0
N7 B:A8 4.1 21.1 1.0
O B:HOH259 4.1 44.3 1.0
O B:HOH208 4.3 26.2 1.0
OP2 B:A8 4.4 28.9 1.0
N6 B:A9 4.6 22.2 1.0
C5' B:A27 4.7 26.7 1.0
N7 B:A9 4.7 28.1 1.0
C8 B:A8 4.8 23.8 1.0
O B:HOH204 4.8 21.6 1.0
O B:HOH230 4.9 34.6 1.0

Reference:

S.Tishchenko, E.Nikonova, A.Nikulin, N.Nevskaya, S.Volchkov, W.Piendl, M.Garber, S.Nikonov. Structure of the Ribosomal Protein L1-Mrna Complex at 2.1 A Resolution: Common Features of Crystal Packing of L1-Rna Complexes. Acta Crystallogr.,Sect.D V. 62 1545 2006.
ISSN: ISSN 0907-4449
PubMed: 17139090
DOI: 10.1107/S0907444906041655
Page generated: Mon Dec 14 07:26:33 2020

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