Atomistry » Magnesium » PDB 2hxh-2iea » 2i55
Atomistry »
  Magnesium »
    PDB 2hxh-2iea »
      2i55 »

Magnesium in PDB 2i55: Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana

Enzymatic activity of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana

All present enzymatic activity of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana:
5.4.2.8;

Protein crystallography data

The structure of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana, PDB code: 2i55 was solved by B.J.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.70 / 2.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.224, 92.224, 172.824, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 26.8

Other elements in 2i55:

The structure of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana (pdb code 2i55). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana, PDB code: 2i55:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 2i55

Go back to Magnesium Binding Sites List in 2i55
Magnesium binding site 1 out of 5 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2002

b:0.8
occ:1.00
 OD2 A:ASP207 2.1 61.9 1.0
OD2 A:ASP10 2.1 70.4 1.0
CG A:ASP207 2.8 62.9 1.0
CG A:ASP10 3.0 68.6 1.0
OD1 A:ASP207 3.0 62.8 1.0
OD2 A:ASP215 3.3 67.0 1.0
O A:ASP12 3.3 68.6 1.0
OG1 A:THR14 3.4 67.8 1.0
CB A:ASP10 3.5 68.4 1.0
N A:ASP207 3.8 63.4 1.0
OD1 A:ASP10 3.8 69.9 1.0
OD1 A:ASP215 4.1 65.2 1.0
CG A:ASP215 4.1 65.5 1.0
CB A:ASP207 4.1 63.5 1.0
N A:LYS208 4.2 64.0 1.0
CA A:ASP207 4.4 63.6 1.0
C A:ASP12 4.4 68.7 1.0
CB A:THR14 4.6 68.2 1.0
CA A:GLY206 4.7 63.5 1.0
C A:GLY206 4.8 63.5 1.0
N A:THR14 4.8 68.5 1.0
C A:ASP207 4.8 63.8 1.0
ND2 A:ASN214 4.8 66.2 1.0
CB A:LYS208 4.9 64.2 1.0
CA A:ASP10 4.9 68.2 1.0

Magnesium binding site 2 out of 5 in 2i55

Go back to Magnesium Binding Sites List in 2i55
Magnesium binding site 2 out of 5 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2001

b:67.1
occ:1.00
 OD2 B:ASP10 2.6 70.3 1.0
OD2 B:ASP207 2.9 67.4 1.0
CG B:LYS208 3.1 66.0 1.0
OD2 B:ASP215 3.2 66.9 1.0
CB B:LYS208 3.3 64.5 1.0
OD1 B:ASN214 3.5 66.3 1.0
CG B:ASP207 3.6 65.0 1.0
CG B:ASP10 3.7 67.5 1.0
OD1 B:ASP207 3.9 66.0 1.0
CG B:ASP215 4.0 62.6 1.0
OD1 B:ASP215 4.2 59.1 1.0
N B:LYS208 4.2 63.7 1.0
O B:ASP12 4.2 67.3 1.0
OD1 B:ASP10 4.2 70.8 1.0
O3P B:B16249 4.3 61.7 1.0
CG B:ASN214 4.4 63.1 1.0
CA B:LYS208 4.4 64.2 1.0
ND2 B:ASN214 4.6 63.8 1.0
O1P B:B16249 4.6 59.9 1.0
CD B:LYS208 4.6 68.4 1.0
C B:ASP207 4.6 63.2 1.0
N B:ASP207 4.6 62.2 1.0
CB B:ASP207 4.9 63.2 1.0
CB B:ASP10 4.9 66.7 1.0
P B:B16249 4.9 64.0 1.0
CA B:ASP207 4.9 62.9 1.0

Magnesium binding site 3 out of 5 in 2i55

Go back to Magnesium Binding Sites List in 2i55
Magnesium binding site 3 out of 5 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2004

b:55.4
occ:1.00
 O B:ASP221 2.2 60.6 1.0
O B:PHE219 2.4 60.8 1.0
CG2 B:THR224 2.6 60.3 1.0
O B:THR224 2.7 58.9 1.0
C B:ASP221 3.2 60.9 1.0
C B:PHE219 3.2 60.3 1.0
N B:ASP221 3.4 61.1 1.0
C B:THR220 3.4 60.8 1.0
CA B:THR220 3.7 60.6 1.0
C B:THR224 3.7 59.1 1.0
N B:THR220 3.7 60.4 1.0
CA B:ASP221 3.9 60.9 1.0
CB B:THR224 3.9 60.0 1.0
O B:THR220 4.0 61.9 1.0
O B:ILE218 4.0 61.0 1.0
CA B:THR224 4.2 59.6 1.0
N B:SER222 4.2 60.5 1.0
N B:THR224 4.3 59.7 1.0
CA B:PHE219 4.3 60.5 1.0
N B:GLY226 4.5 58.0 1.0
CA B:SER222 4.6 59.9 1.0
CB B:ASP221 4.7 61.4 1.0
OG1 B:THR224 4.8 60.2 1.0
N B:ILE225 4.8 58.6 1.0
C B:SER222 4.8 59.8 1.0
CA B:GLY226 4.8 58.2 1.0
C B:ILE218 4.9 60.8 1.0

Magnesium binding site 4 out of 5 in 2i55

Go back to Magnesium Binding Sites List in 2i55
Magnesium binding site 4 out of 5 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg2003

b:0.6
occ:1.00
 OD2 C:ASP10 2.1 69.3 1.0
OD2 C:ASP207 2.5 63.7 1.0
OD2 C:ASP215 3.2 68.8 1.0
CG C:ASP10 3.2 68.1 1.0
CG C:ASP207 3.4 63.2 1.0
O1P C:B161249 3.5 69.1 1.0
OD1 C:ASP207 3.6 62.6 1.0
O C:ASP12 3.7 67.5 1.0
CG C:LYS208 3.7 65.4 1.0
OD1 C:ASP10 3.8 71.7 1.0
CG C:ASP215 4.2 66.5 1.0
CB C:LYS208 4.3 64.9 1.0
CB C:ASP10 4.4 65.8 1.0
OD1 C:ASP215 4.4 65.8 1.0
OD1 C:ASN214 4.4 66.1 1.0
N C:LYS208 4.5 63.9 1.0
N C:ASP207 4.7 62.1 1.0
P C:B161249 4.7 68.3 1.0
NZ C:LYS208 4.8 66.1 1.0
OG1 C:THR14 4.8 66.3 1.0
CB C:ASP207 4.8 62.8 1.0
C C:ASP12 4.8 67.4 1.0
C6 C:B161249 5.0 61.8 1.0

Magnesium binding site 5 out of 5 in 2i55

Go back to Magnesium Binding Sites List in 2i55
Magnesium binding site 5 out of 5 in the Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Complex of Glucose-1,6-Bisphosphate with Phosphomannomutase From Leishmania Mexicana within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg2005

b:80.9
occ:1.00
 O C:PHE219 2.2 63.6 1.0
O C:ASP221 2.4 61.9 1.0
OG1 C:THR224 2.6 60.2 1.0
O C:THR224 3.1 59.7 1.0
C C:PHE219 3.3 63.5 1.0
C C:THR220 3.4 62.8 1.0
C C:ASP221 3.4 62.0 1.0
N C:ASP221 3.5 62.4 1.0
CA C:THR220 3.6 63.0 1.0
O C:THR220 3.8 62.7 1.0
C C:THR224 3.9 59.4 1.0
CB C:THR224 3.9 59.8 1.0
N C:THR220 3.9 63.1 1.0
CA C:ASP221 4.1 62.2 1.0
CA C:THR224 4.3 59.8 1.0
N C:THR224 4.3 60.1 1.0
N C:SER222 4.4 61.7 1.0
N C:GLY226 4.5 57.4 1.0
CA C:PHE219 4.5 63.6 1.0
CA C:SER222 4.6 61.5 1.0
O C:ILE218 4.7 63.6 1.0
N C:ILE225 4.9 58.5 1.0
CB C:ASP221 4.9 62.2 1.0
CA C:GLY226 5.0 57.5 1.0

Reference:

L.Kedzierski, R.L.Malby, B.J.Smith, M.A.Perugini, A.N.Hodder, T.Ilg, P.M.Colman, E.Handman. Structure of Leishmania Mexicana Phosphomannomutase Highlights Similarities with Human Isoforms J.Mol.Biol. V. 363 215 2006.
ISSN: ISSN 0022-2836
PubMed: 16963079
DOI: 10.1016/J.JMB.2006.08.023
Page generated: Wed Aug 14 00:03:49 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy