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Magnesium in PDB 2i71: Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2

Protein crystallography data

The structure of Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2, PDB code: 2i71 was solved by K.Tan, T.Skarina, O.Onopriyenko, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.92 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.849, 84.918, 108.513, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2 (pdb code 2i71). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2, PDB code: 2i71:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2i71

Go back to Magnesium Binding Sites List in 2i71
Magnesium binding site 1 out of 2 in the Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:19.9
occ:1.00
NZ A:LYS68 2.9 32.0 1.0
OH A:TYR105 2.9 14.8 1.0
N A:VAL87 3.1 13.2 1.0
O A:HOH510 3.3 32.6 1.0
CA A:VAL86 3.6 13.6 1.0
O A:VAL87 3.7 11.6 1.0
CZ A:TYR105 3.8 13.1 1.0
CE A:LYS68 3.8 29.6 1.0
CE2 A:TYR105 3.8 12.8 1.0
C A:VAL86 3.8 14.1 1.0
CD A:LYS68 3.9 26.6 1.0
O A:TYR85 4.0 13.6 1.0
O A:HOH639 4.1 39.2 1.0
CA A:VAL87 4.1 12.1 1.0
C A:VAL87 4.3 12.8 1.0
CG1 A:VAL86 4.4 12.7 1.0
CB A:VAL87 4.4 12.2 1.0
ND1 A:HIS109 4.5 21.8 1.0
CB A:VAL86 4.5 13.0 1.0
N A:VAL86 4.6 13.2 1.0
CE1 A:HIS109 4.6 22.5 1.0
O A:HOH667 4.6 36.2 1.0
O A:HOH519 4.6 31.4 1.0
C A:TYR85 4.6 14.7 1.0
O A:HOH647 4.8 36.7 1.0
CG2 A:VAL87 4.9 11.5 1.0
CG2 A:VAL86 5.0 13.5 1.0

Magnesium binding site 2 out of 2 in 2i71

Go back to Magnesium Binding Sites List in 2i71
Magnesium binding site 2 out of 2 in the Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Conserved Protein of Unknown Function From Sulfolobus Solfataricus P2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:16.3
occ:1.00
OH B:TYR105 2.9 11.3 1.0
N B:VAL87 3.2 10.3 1.0
O B:HOH619 3.4 29.4 1.0
CD B:LYS68 3.6 22.7 1.0
CA B:VAL86 3.7 10.3 1.0
CE2 B:TYR105 3.8 9.8 1.0
O B:VAL87 3.8 10.8 1.0
CZ B:TYR105 3.8 12.4 1.0
C B:VAL86 3.9 11.8 1.0
O B:TYR85 4.0 13.7 1.0
NZ B:LYS68 4.1 33.7 1.0
CA B:VAL87 4.2 10.3 1.0
CE B:LYS68 4.3 28.2 1.0
C B:VAL87 4.3 11.4 1.0
CD2 B:HIS109 4.4 18.7 1.0
CG1 B:VAL86 4.4 11.2 1.0
CB B:VAL87 4.5 10.8 1.0
O B:HOH680 4.5 38.7 1.0
CB B:VAL86 4.6 10.2 1.0
CG B:LYS68 4.6 19.3 1.0
O B:HOH746 4.6 37.5 1.0
N B:VAL86 4.7 11.5 1.0
NE2 B:HIS109 4.7 22.0 1.0
C B:TYR85 4.7 12.5 1.0
O B:HOH494 4.8 20.9 1.0
O B:HOH690 4.9 31.2 1.0
CG2 B:VAL87 4.9 11.3 1.0
CG B:HIS109 5.0 13.7 1.0

Reference:

K.Tan, T.Skarina, O.Onopriyenko, A.Savchenko, A.Edwards, A.Joachimiak. The Crystal Structure of A Conserved Hypothetical Protein From Sulfolobus Solfataricus P2 To Be Published.
Page generated: Mon Dec 14 07:26:59 2020

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