Atomistry » Magnesium » PDB 2iea-2iut » 2iec
Atomistry »
  Magnesium »
    PDB 2iea-2iut »
      2iec »

Magnesium in PDB 2iec: Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri, PDB code: 2iec was solved by J.B.Bonanno, U.A.Ramagopal, M.Dickey, K.T.Bain, A.Powell, S.Ozyurt, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.33
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.833, 60.833, 263.945, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 29.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri (pdb code 2iec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri, PDB code: 2iec:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2iec

Go back to Magnesium Binding Sites List in 2iec
Magnesium binding site 1 out of 2 in the Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1

b:32.2
occ:1.00
O C:HOH165 2.2 34.5 1.0
O C:HOH148 2.4 30.2 1.0
O B:HOH161 2.4 33.5 1.0
O A:HOH139 2.4 33.0 1.0
O B:CYS33 2.4 19.9 1.0
O C:CYS33 2.5 20.6 1.0
C B:CYS33 3.1 20.4 1.0
C C:CYS33 3.3 21.3 1.0
N B:GLY34 3.8 20.3 1.0
CB B:CYS33 3.9 20.6 1.0
N C:GLY34 4.0 22.5 1.0
CA B:CYS33 4.0 21.2 1.0
CB C:CYS33 4.0 21.1 1.0
CA C:GLY34 4.1 22.4 1.0
CA B:GLY34 4.2 20.6 1.0
CA C:CYS33 4.2 21.5 1.0
O B:HIS30 4.4 20.8 1.0
OE1 D:GLN31 4.5 15.4 1.0
O C:HIS30 4.5 19.5 1.0
NE2 D:GLN31 4.5 16.8 1.0
N B:CYS33 4.5 20.4 1.0
OE1 A:GLN31 4.6 16.7 1.0
N C:CYS33 4.7 19.6 1.0
NE2 A:GLN31 4.7 21.4 1.0
CD D:GLN31 5.0 19.7 1.0

Magnesium binding site 2 out of 2 in 2iec

Go back to Magnesium Binding Sites List in 2iec
Magnesium binding site 2 out of 2 in the Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1

b:32.8
occ:1.00
O C:HOH160 2.3 30.1 1.0
O D:CYS33 2.4 20.4 1.0
O A:CYS33 2.4 20.7 1.0
O A:HOH137 2.5 29.8 1.0
O D:HOH195 2.6 33.4 1.0
C A:CYS33 3.2 21.6 1.0
C D:CYS33 3.3 21.8 1.0
N A:GLY34 3.9 21.0 1.0
N D:GLY34 4.0 21.1 1.0
CB D:CYS33 4.1 23.3 1.0
CA A:GLY34 4.1 21.4 1.0
CA D:GLY34 4.1 21.7 1.0
CA A:CYS33 4.2 22.2 1.0
CA D:CYS33 4.2 22.9 1.0
CB A:CYS33 4.2 22.2 1.0
O D:HIS30 4.3 18.9 1.0
NE2 B:GLN31 4.4 19.8 1.0
O A:HIS30 4.4 19.8 1.0
NE2 C:GLN31 4.5 13.7 1.0
OE1 C:GLN31 4.5 19.0 1.0
N A:CYS33 4.6 20.7 1.0
OE1 B:GLN31 4.7 19.8 1.0
N D:CYS33 4.7 21.6 1.0
CD C:GLN31 5.0 17.9 1.0
CD B:GLN31 5.0 20.7 1.0

Reference:

J.B.Bonanno, U.A.Ramagopal, M.Dickey, K.T.Bain, A.Powell, S.Ozyurt, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Uncharacterized Conserved Archael Protein From Methanopyrus Kandleri To Be Published.
Page generated: Mon Dec 14 07:27:13 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy