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Magnesium in PDB 2if0: Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group

Enzymatic activity of Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group

All present enzymatic activity of Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group:
3.6.5.2;

Protein crystallography data

The structure of Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group, PDB code: 2if0 was solved by L.M.G.Chavas, S.Torii, H.Kamikubo, M.Kawasaki, K.Ihara, R.Kato, M.Kataoka, T.Izumi, S.Wakatsuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.10 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.960, 64.755, 153.327, 90.00, 90.00, 90.00
R / Rfree (%) 25.9 / 31.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group (pdb code 2if0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group, PDB code: 2if0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2if0

Go back to Magnesium Binding Sites List in 2if0
Magnesium binding site 1 out of 2 in the Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:32.8
occ:1.00
O1B A:GDP501 1.9 22.0 1.0
OG1 A:THR23 2.3 31.4 1.0
PB A:GDP501 2.9 23.6 1.0
O2B A:GDP501 3.0 22.9 1.0
O2A A:GDP501 3.2 25.6 1.0
CB A:THR23 3.2 32.5 1.0
O3A A:GDP501 3.6 25.3 1.0
PA A:GDP501 3.7 26.6 1.0
O1A A:GDP501 3.9 26.7 1.0
N A:THR23 4.2 32.7 1.0
O3B A:GDP501 4.2 23.3 1.0
CG2 A:THR23 4.2 30.8 1.0
CA A:THR23 4.3 32.6 1.0
O B:THR75 4.6 35.2 1.0

Magnesium binding site 2 out of 2 in 2if0

Go back to Magnesium Binding Sites List in 2if0
Magnesium binding site 2 out of 2 in the Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mouse RAB27B Bound to Gdp in Monoclinic Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:31.1
occ:1.00
OG1 B:THR23 2.2 30.2 1.0
O3B B:GDP1501 2.3 27.5 1.0
O1B B:GDP1501 3.0 27.1 1.0
PB B:GDP1501 3.2 27.8 1.0
CB B:THR23 3.5 29.1 1.0
O2A B:GDP1501 3.8 31.2 1.0
O A:THR75 4.1 31.0 1.0
N B:THR23 4.2 28.7 1.0
O A:HOH605 4.2 27.4 1.0
O2B B:GDP1501 4.3 27.4 1.0
O3A B:GDP1501 4.3 29.5 1.0
PA B:GDP1501 4.4 31.1 1.0
CG2 B:THR23 4.4 28.7 1.0
CA B:THR23 4.5 29.1 1.0
O1A B:GDP1501 4.6 29.4 1.0
OD2 A:ASP74 4.8 31.5 1.0
CE B:LYS22 4.8 22.7 1.0
NZ B:LYS22 4.9 22.2 1.0
OD1 A:ASP74 5.0 32.3 1.0

Reference:

L.M.G.Chavas, S.Torii, H.Kamikubo, M.Kawasaki, K.Ihara, R.Kato, M.Kataoka, T.Izumi, S.Wakatsuki. Structure of the Small Gtpase RAB27B Shows An Unexpected Swapped Dimer Acta Crystallogr.,Sect.D V. 63 769 2007.
ISSN: ISSN 0907-4449
PubMed: 17582168
DOI: 10.1107/S0907444907019725
Page generated: Mon Dec 14 07:27:16 2020

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