Magnesium in PDB 2j0v: The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom

The structure of The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom, PDB code: 2j0v was solved by C.G.Sormo, I.Leiros, T.Brembu, P.Winge, V.Os, A.M.Bones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.80 / 1.78
Space group	P 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.760, 30.200, 139.360, 90.00, 100.06, 90.00
R / Rfree (%)	18.7 / 22.7

The binding sites of Magnesium atom in the The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom (pdb code 2j0v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom, PDB code: 2j0v:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1180 b:10.0 occ:1.00 O A:HOH2069 2.0 10.5 1.0 O A:HOH2073 2.0 12.0 1.0 OG1 A:THR20 2.1 8.4 1.0 O3B A:GDP1179 2.1 7.8 1.0 O A:HOH2027 2.1 9.5 1.0 O A:THR38 2.2 9.9 1.0 CB A:THR20 3.2 7.4 1.0 C A:THR38 3.3 11.8 1.0 PB A:GDP1179 3.3 10.5 1.0 O2B A:GDP1179 3.5 10.1 1.0 OD2 A:ASP60 3.9 10.4 1.0 N A:THR20 4.0 9.0 1.0 O A:PRO37 4.0 12.1 1.0 O2A A:GDP1179 4.1 10.6 1.0 CA A:THR38 4.1 11.4 1.0 CA A:THR20 4.1 8.5 1.0 N A:VAL39 4.2 11.9 1.0 CG2 A:THR20 4.3 8.1 1.0 O1B A:GDP1179 4.4 10.3 1.0 O3A A:GDP1179 4.4 10.5 1.0 OD1 A:ASP60 4.4 11.4 1.0 O A:THR61 4.4 17.0 1.0 CA A:VAL39 4.4 14.8 1.0 CG A:ASP60 4.6 9.5 1.0 PA A:GDP1179 4.6 9.1 1.0 O1A A:GDP1179 4.7 10.6 1.0 O A:HOH2008 4.8 15.7 1.0 NZ A:LYS19 4.8 9.5 1.0 C A:PRO37 4.9 12.6 1.0 CG2 A:THR38 5.0 12.1 1.0 CB A:LYS19 5.0 7.9 1.0 O A:HOH2071 5.0 24.1 1.0 N A:THR38 5.0 11.5 1.0

Magnesium binding site 2 out of 4 in the The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1183 b:9.7 occ:1.00 O3B B:GDP1182 2.0 5.4 1.0 O B:HOH2093 2.1 8.1 1.0 O B:HOH2032 2.1 7.8 1.0 O B:HOH2097 2.1 7.7 1.0 OG1 B:THR20 2.1 7.6 1.0 O B:THR38 2.2 9.5 1.0 CB B:THR20 3.2 7.5 1.0 PB B:GDP1182 3.2 8.8 1.0 C B:THR38 3.3 9.8 1.0 O2B B:GDP1182 3.4 9.4 1.0 O B:PRO37 4.0 11.5 1.0 N B:THR20 4.0 6.9 1.0 O2A B:GDP1182 4.0 9.3 1.0 CA B:THR38 4.1 9.7 1.0 OD2 B:ASP60 4.2 7.6 1.0 CA B:THR20 4.2 6.7 1.0 O1B B:GDP1182 4.3 6.8 1.0 CG2 B:THR20 4.3 9.9 1.0 O3A B:GDP1182 4.3 8.3 1.0 N B:VAL39 4.3 10.2 1.0 OD1 B:ASP60 4.4 12.8 1.0 PA B:GDP1182 4.5 9.3 1.0 O B:THR61 4.5 11.9 1.0 CA B:VAL39 4.6 12.8 1.0 CG B:ASP60 4.7 10.9 1.0 O1A B:GDP1182 4.8 7.4 1.0 O B:HOH2012 4.8 7.9 1.0 CG2 B:THR38 4.8 7.5 1.0 CE B:LYS19 4.9 7.3 1.0 C B:PRO37 4.9 11.4 1.0 NZ B:LYS19 4.9 11.9 1.0

Magnesium binding site 3 out of 4 in the The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1179 b:12.7 occ:1.00 OG1 C:THR20 1.9 13.8 1.0 O3B C:GDP1178 2.0 11.9 1.0 O C:HOH2021 2.0 13.6 1.0 O C:HOH2059 2.0 15.7 1.0 O C:HOH2058 2.2 12.1 1.0 O C:THR38 2.2 14.8 1.0 CB C:THR20 3.1 12.8 1.0 C C:THR38 3.3 14.8 1.0 PB C:GDP1178 3.3 14.1 1.0 O2B C:GDP1178 3.4 14.8 1.0 OD2 C:ASP60 3.9 16.9 1.0 N C:THR20 3.9 11.8 1.0 O C:PRO37 4.0 16.9 1.0 CA C:THR20 4.0 12.8 1.0 CG2 C:THR20 4.1 12.8 1.0 CA C:THR38 4.1 14.5 1.0 O2A C:GDP1178 4.2 15.8 1.0 N C:VAL39 4.2 16.7 1.0 OD1 C:ASP60 4.3 15.9 1.0 O3A C:GDP1178 4.3 12.8 1.0 O1B C:GDP1178 4.3 15.2 1.0 O C:THR61 4.4 20.2 1.0 CA C:VAL39 4.5 18.5 1.0 O C:HOH2004 4.5 24.6 1.0 CG C:ASP60 4.5 15.4 1.0 PA C:GDP1178 4.6 15.5 1.0 O1A C:GDP1178 4.7 13.0 1.0 NZ C:LYS19 4.9 15.4 1.0 C C:PRO37 4.9 16.6 1.0 CE C:LYS19 5.0 12.5 1.0 CG2 C:THR38 5.0 13.3 1.0 CB C:LYS19 5.0 11.5 1.0

Magnesium binding site 4 out of 4 in the The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Crystal Structure of Arabidopsis Thaliana RAC7-ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1181 b:11.6 occ:1.00 OG1 D:THR20 2.0 11.1 1.0 O3B D:GDP1180 2.0 9.1 1.0 O D:HOH2062 2.0 15.6 1.0 O D:THR38 2.1 13.4 1.0 O D:HOH2066 2.2 15.1 1.0 O D:HOH2018 2.2 10.9 1.0 CB D:THR20 3.1 10.8 1.0 PB D:GDP1180 3.3 11.0 1.0 C D:THR38 3.3 15.0 1.0 O2B D:GDP1180 3.5 11.7 1.0 N D:THR20 3.9 10.7 1.0 O D:PRO37 4.0 13.9 1.0 OD2 D:ASP60 4.0 14.4 1.0 O2A D:GDP1180 4.1 13.6 1.0 CA D:THR38 4.1 14.5 1.0 CA D:THR20 4.1 11.1 1.0 CG2 D:THR20 4.2 10.7 1.0 O3A D:GDP1180 4.3 8.8 1.0 N D:VAL39 4.3 15.1 1.0 O1B D:GDP1180 4.3 11.1 1.0 OD1 D:ASP60 4.4 12.1 1.0 CA D:VAL39 4.4 17.2 1.0 O D:THR61 4.5 17.7 1.0 CG D:ASP60 4.6 14.1 1.0 PA D:GDP1180 4.6 11.7 1.0 O1A D:GDP1180 4.7 12.0 1.0 O D:HOH2006 4.8 14.9 1.0 C D:PRO37 4.9 15.6 1.0 CG2 D:THR38 4.9 12.7 1.0 CB D:LYS19 4.9 8.4 1.0

C.G.Sormo, I.Leiros, T.Brembu, P.Winge, V.Os, A.M.Bones. The Crystal Structure of Arabidopsis Thaliana RAC7/ROP9: the First Ras Superfamily Gtpase From the Plant Kingdom. Phytochemistry V. 67 2332 2006.
ISSN: ISSN 0031-9422
PubMed: 17005216
DOI: 10.1016/J.PHYTOCHEM.2006.08.011