Magnesium in PDB 2j28: Model of E. Coli Srp Bound to 70S Rncs

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 111;

Binding sites:

The binding sites of Magnesium atom in the Model of E. Coli Srp Bound to 70S Rncs (pdb code 2j28). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 111 binding sites of Magnesium where determined in the Model of E. Coli Srp Bound to 70S Rncs, PDB code: 2j28:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3904 b:7.8 occ:1.00 O B:HOH6203 2.1 7.8 1.0 O B:HOH6201 2.1 7.8 1.0 O B:HOH6205 2.1 7.8 1.0 O B:HOH6206 2.1 7.8 1.0 O B:HOH6202 2.1 7.8 1.0 O B:HOH6204 2.1 7.8 1.0 O4 B:U2243 3.9 9.9 1.0 C8 B:G2238 4.0 12.4 1.0 N7 B:G2238 4.0 12.4 1.0 O4 B:U2075 4.2 21.4 1.0 O4 B:U2074 4.4 5.3 1.0 O6 B:G2242 4.4 22.0 1.0 N7 B:A2241 4.8 5.9 1.0 C4 B:U2243 4.8 9.9 1.0 N7 B:G2242 4.8 22.0 1.0 N6 B:A2077 4.9 19.4 1.0 C4 B:U2074 4.9 5.3 1.0 C5 B:U2074 5.0 5.3 1.0

Magnesium binding site 2 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3905 b:38.0 occ:1.00 OP1 B:C1774 2.0 10.7 1.0 O B:HOH5635 2.1 38.0 1.0 O B:HOH5634 2.1 38.0 1.0 O B:HOH5631 2.1 38.0 1.0 O B:HOH5632 2.1 38.0 1.0 O B:HOH5633 2.1 38.0 1.0 P B:C1774 3.2 10.7 1.0 OP2 B:C1774 3.7 10.7 1.0 N3 B:A1772 3.8 14.5 1.0 O5' B:C1774 4.2 10.7 1.0 OP1 B:A1786 4.2 5.5 1.0 O2' B:A1772 4.2 12.7 1.0 O3' B:A1773 4.3 9.3 1.0 C2 B:A1772 4.3 14.5 1.0 OP2 B:U1775 4.4 5.0 1.0 OP2 B:A1786 4.4 5.5 1.0 C5' B:C1774 4.5 10.7 1.0 O6 B:G1776 4.5 20.2 1.0 P B:A1786 4.6 5.5 1.0 O5' B:A1786 4.7 5.5 1.0 C1' B:A1772 4.8 12.7 1.0 N6 B:A1789 4.8 22.1 1.0 C4 B:A1772 4.9 14.5 1.0 C2' B:A1772 4.9 12.7 1.0

Magnesium binding site 3 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3906 b:14.7 occ:1.00 O B:HOH6218 2.1 14.7 1.0 O B:HOH6219 2.1 14.7 1.0 O B:HOH6222 2.1 14.7 1.0 O B:HOH6221 2.1 14.7 1.0 O B:HOH6220 2.1 14.7 1.0 O B:HOH6217 2.1 14.7 1.0 OP1 B:G831 3.6 13.6 1.0 CB L:ARG41 4.0 58.4 1.0 N1 B:A2448 4.1 20.3 1.0 OP1 B:U568 4.3 13.2 1.0 N7 B:A945 4.3 36.7 1.0 OP2 B:C944 4.4 5.0 1.0 N6 B:A2448 4.5 20.3 1.0 CG L:ARG41 4.6 58.4 1.0 C8 B:A945 4.7 36.7 1.0 P B:G831 4.7 13.6 1.0 O3' B:G830 4.7 28.6 1.0 C6 B:A2448 4.8 20.3 1.0 O L:ARG41 5.0 58.4 1.0

Magnesium binding site 4 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3907 b:19.5 occ:1.00 OP2 B:C946 1.9 5.0 1.0 O B:HOH5267 2.1 19.5 1.0 O B:HOH5270 2.1 19.5 1.0 O B:HOH5269 2.1 19.5 1.0 O B:HOH5268 2.1 19.5 1.0 OP2 B:A945 2.5 9.0 1.0 P B:C946 3.2 5.0 1.0 O3' B:C944 3.3 5.0 1.0 P B:A945 3.5 9.0 1.0 OP1 B:C946 3.7 5.0 1.0 C4' B:A945 3.9 9.0 1.0 C5' B:A945 4.0 9.0 1.0 O3' B:A945 4.1 9.0 1.0 OP2 B:G822 4.1 5.7 1.0 C3' B:A945 4.2 9.0 1.0 O5' B:A945 4.3 9.0 1.0 O5' B:C946 4.3 5.0 1.0 O2' B:C944 4.4 5.0 1.0 O3' B:A821 4.5 5.0 1.0 O B:HOH5783 4.6 10.7 1.0 O2' B:A821 4.6 5.0 1.0 C3' B:C944 4.6 5.0 1.0 OP1 B:A945 4.8 9.0 1.0 C5' B:C946 4.8 5.0 1.0 P B:G822 5.0 5.7 1.0

Magnesium binding site 5 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3908 b:9.0 occ:1.00 O B:HOH6234 2.1 9.0 1.0 O B:HOH6235 2.1 9.0 1.0 O B:HOH6238 2.1 9.0 1.0 O B:HOH6237 2.1 9.0 1.0 O B:HOH6236 2.1 9.0 1.0 O B:HOH6233 2.1 9.0 1.0 OP2 B:G1959 4.0 11.5 1.0 OP1 B:A1936 4.2 9.7 1.0 O B:HOH6141 4.4 15.6 1.0 OP1 B:A1937 4.4 19.1 1.0 OP2 B:C1958 4.5 5.0 1.0 C5' B:A1937 4.5 19.1 1.0 N7 B:G1959 4.5 8.8 1.0 C8 B:G1959 5.0 8.8 1.0

Magnesium binding site 6 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3909 b:5.2 occ:1.00 O B:HOH6250 2.1 5.2 1.0 O B:HOH6251 2.1 5.2 1.0 O B:HOH6253 2.1 5.2 1.0 O B:HOH6254 2.1 5.2 1.0 O B:HOH6252 2.1 5.2 1.0 O B:HOH6249 2.1 5.2 1.0 OP1 B:C1986 3.7 8.8 1.0 OP1 B:C2551 4.2 13.4 1.0 O6 B:G1954 4.3 15.1 1.0 OP2 B:A1987 4.4 23.3 1.0 OP1 B:A1987 4.5 23.3 1.0 N1 B:G1954 4.5 15.1 1.0 C6 B:G1954 4.6 15.1 1.0 OP1 B:A1669 4.7 19.6 1.0 O3' B:G2550 4.8 12.7 1.0 P B:C1986 4.8 8.8 1.0 P B:A1987 4.8 23.3 1.0 O B:HOH5035 4.9 55.0 1.0

Magnesium binding site 7 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3910 b:12.7 occ:1.00 OP2 B:A1970 2.0 11.4 1.0 O B:HOH5646 2.1 12.7 1.0 O B:HOH5650 2.1 12.7 1.0 O B:HOH5649 2.1 12.7 1.0 O B:HOH5647 2.1 12.7 1.0 O B:HOH5648 2.1 12.7 1.0 P B:A1970 3.3 11.4 1.0 OP2 B:G1835 3.7 14.4 1.0 OP1 B:A1970 3.7 11.4 1.0 O2' B:U1834 3.8 14.0 1.0 OP2 B:A1900 4.0 5.0 1.0 C3' B:A1969 4.2 13.5 1.0 O3' B:A1969 4.2 13.5 1.0 N7 B:G1835 4.3 24.3 1.0 O5' B:A1970 4.3 11.4 1.0 C5' B:A1969 4.5 13.5 1.0 C2' B:U1834 4.8 14.0 1.0 N4 B:C1836 4.9 5.0 1.0 O3' B:U1834 4.9 14.0 1.0 C4' B:A1969 4.9 13.5 1.0 P B:G1835 4.9 14.4 1.0 O6 B:G1835 5.0 24.3 1.0 C5' B:A1970 5.0 11.4 1.0

Magnesium binding site 8 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3911 b:24.1 occ:1.00 OP2 B:G1776 1.9 17.6 1.0 O B:HOH5661 2.1 24.1 1.0 O B:HOH5664 2.1 24.1 1.0 O B:HOH5665 2.1 24.1 1.0 O B:HOH5662 2.1 24.1 1.0 O B:HOH5663 2.1 24.1 1.0 P B:G1776 3.4 17.6 1.0 O5' B:G1776 4.0 17.6 1.0 OP1 B:A1981 4.1 13.8 1.0 OP2 B:U1775 4.2 5.0 1.0 O3' B:U1775 4.3 5.0 1.0 N7 B:G1776 4.3 20.2 1.0 OP1 B:G1776 4.4 17.6 1.0 C8 B:G1776 4.4 20.2 1.0 OP1 B:U1775 4.5 5.0 1.0 P B:U1775 4.7 5.0 1.0 C3' B:U1775 4.7 5.0 1.0 O5' B:U1775 4.8 5.0 1.0

Magnesium binding site 9 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3912 b:7.2 occ:1.00 OP2 B:A1664 2.0 18.6 1.0 O B:HOH5676 2.1 7.2 1.0 O B:HOH5680 2.1 7.2 1.0 O B:HOH5677 2.1 7.2 1.0 O B:HOH5678 2.1 7.2 1.0 O B:HOH5679 2.1 7.2 1.0 P B:A1664 3.4 18.6 1.0 N7 B:G1992 3.6 24.1 1.0 OP1 B:G1992 4.0 14.9 1.0 C3' B:G1663 4.1 21.1 1.0 O6 B:G1667 4.1 28.4 1.0 OP1 B:A1664 4.1 18.6 1.0 O3' B:G1663 4.3 21.1 1.0 N6 B:A1665 4.3 12.2 1.0 OP2 B:G1992 4.3 14.9 1.0 C8 B:G1992 4.3 24.1 1.0 O6 B:G1992 4.4 24.1 1.0 C2' B:G1663 4.4 21.1 1.0 C5 B:G1992 4.4 24.1 1.0 O5' B:A1664 4.4 18.6 1.0 N7 B:A1665 4.5 12.2 1.0 N7 B:A1664 4.5 15.3 1.0 N1 B:G1667 4.6 28.4 1.0 O6 B:G1666 4.6 12.8 1.0 P B:G1992 4.7 14.9 1.0 C6 B:G1667 4.7 28.4 1.0 C6 B:G1992 4.7 24.1 1.0 C8 B:A1664 4.9 15.3 1.0 N7 B:G1666 4.9 12.8 1.0

Magnesium binding site 10 out of 111 in the Model of E. Coli Srp Bound to 70S Rncs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Model of E. Coli Srp Bound to 70S Rncs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg3913 b:12.1 occ:1.00 OP1 B:U567 1.9 15.4 1.0 O B:HOH5695 2.1 12.1 1.0 O B:HOH5692 2.1 12.1 1.0 O B:HOH5693 2.1 12.1 1.0 O B:HOH5691 2.1 12.1 1.0 O B:HOH5694 2.1 12.1 1.0 P B:U567 3.2 15.4 1.0 O3' B:U566 3.4 16.6 1.0 O4 B:U810 4.2 18.4 1.0 O5' B:U567 4.2 15.4 1.0 OP2 B:U567 4.2 15.4 1.0 C5' B:U567 4.3 15.4 1.0 OP2 B:G809 4.3 9.5 1.0 NH2 L:ARG41 4.6 58.4 1.0 OP2 B:G808 4.6 11.5 1.0 N7 B:G809 4.8 32.8 1.0 C3' B:U566 4.9 16.6 1.0

M.Halic, M.Blau, T.Becker, T.Mielke, M.R.Pool, K.Wild, I.Sinning, R.Beckmann. Following the Signal Sequence From Ribosomal Tunnel Exit to Signal Recognition Particle Nature V. 444 508 2006.
ISSN: ISSN 0028-0836
PubMed: 17086193
DOI: 10.1038/NATURE05326