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Magnesium in PDB 2j7o: Structure of the Rnai Polymerase From Neurospora Crassa

Protein crystallography data

The structure of Structure of the Rnai Polymerase From Neurospora Crassa, PDB code: 2j7o was solved by P.S.Salgado, M.R.L.Koivunen, E.V.Makeyev, D.H.Bamford, D.I.Stuart, J.M.Grimes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.0 / 3.5
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.596, 125.015, 102.204, 90.00, 108.75, 90.00
R / Rfree (%) 35.31 / 35.97

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Rnai Polymerase From Neurospora Crassa (pdb code 2j7o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Rnai Polymerase From Neurospora Crassa, PDB code: 2j7o:

Magnesium binding site 1 out of 1 in 2j7o

Go back to Magnesium Binding Sites List in 2j7o
Magnesium binding site 1 out of 1 in the Structure of the Rnai Polymerase From Neurospora Crassa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Rnai Polymerase From Neurospora Crassa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2373

b:0.0
occ:1.00
OD1 A:ASP1011 2.0 0.7 1.0
OD1 A:ASP1009 2.1 0.8 1.0
OD1 A:ASP1007 2.1 0.0 1.0
CG A:ASP1009 2.9 0.2 1.0
CG A:ASP1011 3.0 0.1 1.0
CG A:ASP1007 3.2 0.8 1.0
OD2 A:ASP1009 3.3 0.6 1.0
OD2 A:ASP1011 3.3 0.8 1.0
OD2 A:ASP1007 3.6 0.1 1.0
CB A:ASP1009 4.2 0.1 1.0
N A:ASP1011 4.2 0.8 1.0
CB A:ASP1011 4.3 0.5 1.0
N A:ASP1009 4.3 0.6 1.0
N A:ASP1007 4.5 0.8 1.0
CB A:ASP1007 4.5 0.5 1.0
O A:ASP1007 4.5 0.8 1.0
CA A:ASP1009 4.6 0.6 1.0
C A:ASP1009 4.6 0.1 1.0
C A:ASP1007 4.6 0.6 1.0
CA A:ASP1011 4.7 0.4 1.0
CA A:ASP1007 4.8 1.0 1.0
N A:GLY1010 4.8 0.7 1.0

Reference:

P.S.Salgado, M.R.L.Koivunen, E.V.Makeyev, D.H.Bamford, D.I.Stuart, J.M.Grimes. The Structure of An Rnai Polymerase Links Rna Silencing and Transcription. Plos Biol. V. 4 E434 2006.
ISSN: ISSN 1544-9173
PubMed: 17147473
DOI: 10.1371/JOURNAL.PBIO.0040434
Page generated: Mon Dec 14 07:28:51 2020

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