Magnesium in PDB 2j7p: Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy

The structure of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2j7p was solved by D.M.Freymann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.94 / 1.97
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.029, 129.556, 88.964, 90.00, 91.66, 90.00
R / Rfree (%)	18.4 / 22.7

The structure of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Iodine	(I)	16 atoms

The binding sites of Magnesium atom in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy (pdb code 2j7p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2j7p:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1401 b:17.7 occ:1.00 O A:HOH2084 2.1 17.5 1.0 O2B A:GNP1400 2.1 15.5 1.0 O1G A:GNP1400 2.1 19.7 1.0 OG1 A:THR112 2.1 17.3 1.0 O A:HOH2073 2.1 16.4 1.0 O A:HOH2100 2.1 18.3 1.0 PB A:GNP1400 3.2 17.1 1.0 CB A:THR112 3.3 16.7 1.0 PG A:GNP1400 3.3 16.9 1.0 N3B A:GNP1400 3.5 18.2 1.0 N A:THR112 3.9 16.3 1.0 OD2 A:ASP187 4.0 23.0 1.0 CA A:THR112 4.1 16.9 1.0 OD2 A:ASP135 4.1 21.4 1.0 OD1 A:ASP187 4.1 25.6 1.0 O A:HOH2101 4.2 22.5 1.0 O3G A:GNP1400 4.2 17.6 1.0 O1B A:GNP1400 4.3 14.7 1.0 O2G A:GNP1400 4.3 18.8 1.0 O3A A:GNP1400 4.3 16.7 1.0 CG2 A:THR112 4.4 16.4 1.0 O2A A:GNP1400 4.4 17.4 1.0 O A:HOH2075 4.4 21.2 1.0 OE1 A:GLN144 4.5 19.0 1.0 CG A:ASP187 4.5 21.8 1.0 PA A:GNP1400 4.7 16.7 1.0 O A:THR188 4.7 18.5 1.0 CE A:LYS111 4.7 10.6 1.0 O1A A:GNP1400 4.7 17.4 1.0 CD A:ARG138 4.8 20.7 1.0 CB A:LYS111 4.8 14.7 1.0 C A:LYS111 4.9 15.7 1.0

Magnesium binding site 2 out of 4 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1401 b:17.5 occ:1.00 O2B B:GNP1400 2.1 17.7 1.0 O B:HOH2122 2.1 17.1 1.0 O1G B:GNP1400 2.1 19.1 1.0 OG1 B:THR112 2.1 15.9 1.0 O B:HOH2087 2.1 17.6 1.0 O B:HOH2165 2.1 20.2 1.0 PB B:GNP1400 3.2 16.6 1.0 CB B:THR112 3.3 18.8 1.0 PG B:GNP1400 3.3 18.6 1.0 N3B B:GNP1400 3.4 17.8 1.0 N B:THR112 3.9 18.1 1.0 OD2 B:ASP187 4.0 25.5 1.0 CA B:THR112 4.1 18.0 1.0 O3G B:GNP1400 4.1 17.5 1.0 OD2 B:ASP135 4.2 23.5 1.0 OD1 B:ASP187 4.2 23.9 1.0 O1B B:GNP1400 4.2 17.1 1.0 O2A B:GNP1400 4.2 17.0 1.0 O3A B:GNP1400 4.3 16.6 1.0 O2G B:GNP1400 4.3 21.4 1.0 O B:HOH2121 4.3 25.8 1.0 CG2 B:THR112 4.4 18.2 1.0 CG B:ASP187 4.5 25.2 1.0 O B:HOH2088 4.6 18.7 1.0 OE1 B:GLN144 4.6 16.9 1.0 CD B:ARG138 4.6 22.9 1.0 PA B:GNP1400 4.6 17.7 1.0 CE B:LYS111 4.7 17.4 1.0 O B:THR188 4.7 20.1 1.0 O1A B:GNP1400 4.8 17.3 1.0 CB B:LYS111 4.8 17.8 1.0 NH1 B:ARG138 4.8 21.8 1.0 C B:LYS111 5.0 18.4 1.0 NE B:ARG138 5.0 22.6 1.0

Magnesium binding site 3 out of 4 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1401 b:16.9 occ:1.00 O D:HOH2054 2.1 18.1 1.0 O D:HOH2072 2.1 18.9 1.0 O1G D:GNP1400 2.1 16.8 1.0 OG1 D:THR116 2.1 16.9 1.0 O2B D:GNP1400 2.1 16.1 1.0 O D:HOH2047 2.1 12.9 1.0 CB D:THR116 3.2 17.9 1.0 PB D:GNP1400 3.3 16.4 1.0 PG D:GNP1400 3.3 15.8 1.0 N3B D:GNP1400 3.4 15.7 1.0 NH1 D:ARG142 3.9 26.3 1.0 N D:THR116 3.9 18.1 1.0 OD2 D:ASP191 4.1 21.8 1.0 CA D:THR116 4.1 18.7 1.0 OD2 D:ASP139 4.2 24.4 1.0 O3G D:GNP1400 4.2 15.5 1.0 O D:HOH2049 4.3 23.1 1.0 O2A D:GNP1400 4.3 17.5 1.0 O2G D:GNP1400 4.3 15.9 1.0 CG2 D:THR116 4.3 18.4 1.0 OD1 D:ASP191 4.3 21.5 1.0 O1B D:GNP1400 4.3 18.1 1.0 OE1 D:GLN148 4.3 19.3 1.0 O3A D:GNP1400 4.4 15.7 1.0 PA D:GNP1400 4.6 18.2 1.0 CG D:ASP191 4.6 21.7 1.0 CE D:LYS115 4.7 16.6 1.0 O D:THR192 4.7 19.8 1.0 O1A D:GNP1400 4.8 19.8 1.0 CB D:LYS115 4.8 17.2 1.0 NZ D:LYS115 4.9 18.6 1.0 CZ D:ARG142 4.9 26.0 1.0 C D:LYS115 5.0 17.4 1.0

Magnesium binding site 4 out of 4 in the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1401 b:16.2 occ:1.00 O1G E:GNP1400 2.1 15.9 1.0 O E:HOH2037 2.1 15.4 1.0 O E:HOH2042 2.1 16.4 1.0 O2B E:GNP1400 2.1 14.6 1.0 OG1 E:THR116 2.1 16.7 1.0 O E:HOH2061 2.1 17.8 1.0 CB E:THR116 3.2 17.8 1.0 PB E:GNP1400 3.2 15.8 1.0 PG E:GNP1400 3.3 16.9 1.0 N3B E:GNP1400 3.4 17.2 1.0 N E:THR116 3.9 17.5 1.0 NH1 E:ARG142 3.9 23.9 1.0 OD2 E:ASP191 4.0 22.5 1.0 CA E:THR116 4.1 17.6 1.0 O2A E:GNP1400 4.2 15.3 1.0 OD2 E:ASP139 4.3 20.9 1.0 O2G E:GNP1400 4.3 17.1 1.0 O3G E:GNP1400 4.3 15.6 1.0 O1B E:GNP1400 4.3 16.1 1.0 O E:HOH2036 4.3 20.0 1.0 CG2 E:THR116 4.3 17.8 1.0 OD1 E:ASP191 4.3 23.5 1.0 O3A E:GNP1400 4.3 17.3 1.0 OE1 E:GLN148 4.4 18.4 1.0 CE E:LYS115 4.5 13.7 1.0 PA E:GNP1400 4.6 17.9 1.0 CG E:ASP191 4.6 21.3 1.0 O E:THR192 4.6 18.6 1.0 CB E:LYS115 4.7 16.8 1.0 O1A E:GNP1400 4.8 17.3 1.0 NZ E:LYS115 4.8 16.3 1.0 C E:LYS115 4.9 17.5 1.0 CB E:ASP139 5.0 22.4 1.0

J.Gawronski-Salerno, D.M.Freymann. Structure of the Gmppnp-Stabilized Ng Domain Complex of the Srp Gtpases Ffh and Ftsy. J.Struct.Biol. V. 158 122 2007.
ISSN: ISSN 1047-8477
PubMed: 17184999
DOI: 10.1016/J.JSB.2006.10.025