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Magnesium in PDB 2jga: Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium

Enzymatic activity of Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium

All present enzymatic activity of Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium:
3.1.3.5;

Protein crystallography data

The structure of Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium, PDB code: 2jga was solved by K.Wallden, P.Stenmark, C.Arrowsmith, H.Berglund, R.Collins, A.Edwards, M.Ehn, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, M.Hallberg, B.Holmberg, L.Schiavone, M.Hogbom, T.Kotenyova, A.Magnusdottir, P.Nilsson-Ehle, T.Nyman, D.Ogg, C.Persson, J.Sagemark, M.Sundstrom, A.G.Thorsell, J.Uppenberg, S.Van Den Berg, J.Weigelt, M.Welin, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.19 / 3.01
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 87.459, 101.036, 77.046, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 26.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium (pdb code 2jga). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium, PDB code: 2jga:

Magnesium binding site 1 out of 1 in 2jga

Go back to Magnesium Binding Sites List in 2jga
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Cytosolic 5'-Nucleotidase III in Complex with Phosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1288

b:30.4
occ:1.00
 OD1 A:ASP227 2.2 46.1 1.0
O4 A:PO41287 2.3 46.9 1.0
O A:ASP40 2.3 35.6 1.0
OD1 A:ASP38 2.6 30.6 1.0
CG A:ASP227 3.0 43.5 1.0
OD2 A:ASP227 3.1 44.2 1.0
C A:ASP40 3.4 35.1 1.0
P A:PO41287 3.7 47.9 1.0
CG A:ASP38 3.8 32.5 1.0
CB A:ASP40 4.0 35.0 1.0
CA A:ASP40 4.1 34.8 1.0
OD2 A:ASP231 4.1 40.7 1.0
OG1 A:THR42 4.1 36.2 1.0
O1 A:PO41287 4.2 45.0 1.0
O2 A:PO41287 4.3 48.1 1.0
CB A:MET41 4.3 35.5 1.0
N A:ASP40 4.4 34.4 1.0
N A:MET41 4.4 35.3 1.0
CB A:ASP227 4.5 41.8 1.0
CG A:MET41 4.6 36.1 1.0
O3 A:PO41287 4.6 48.5 1.0
OD2 A:ASP38 4.7 31.0 1.0
CB A:ASP38 4.7 32.6 1.0
CA A:MET41 4.7 35.1 1.0
C A:MET41 4.9 35.1 1.0
C A:PHE39 5.0 34.1 1.0
N A:THR42 5.0 34.8 1.0

Reference:

K.Wallden, P.Stenmark, T.Nyman, S.Flodin, S.Graslund, P.Loppnau, V.Bianchi, P.Nordlund. Crystal Structure of Human Cytosolic 5'-Nucleotidase II: Insights Into Allosteric Regulation and Substrate Recognition. J.Biol.Chem. V. 282 17828 2007.
ISSN: ISSN 0021-9258
PubMed: 17405878
DOI: 10.1074/JBC.M700917200
Page generated: Wed Aug 14 00:45:56 2024

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